# Weaker neuroligin 2–neurexin β1 interaction tethers membranes and recruits gephyrin at membrane junctions through clustering

**Authors:** Robbie Boyd, Khuloud Jaqaman, Weiwei Wang

PMC · DOI: 10.1126/sciadv.ads9732 · 2026-03-13

## TL;DR

This study shows how the weak interaction between neuroligin 2 and neurexin β1 helps form synapses by tethering membranes and recruiting key proteins.

## Contribution

The paper reveals a dual role of the NL2-NRXβ1 interaction as both a mechanical tether and signaling receptor.

## Key findings

- NL2 and NRXβ1 cluster at intercellular junctions and recruit gephyrin.
- The weak NL2-NRXβ1 interaction tethers lipid membranes despite low affinity.
- NL2 promotes synapse formation through an avidity effect despite low binding strength.

## Abstract

Single-pass transmembrane proteins neuroligin (NL) and neurexin (NRX) constitute a pair of synaptic adhesion molecules that are essential for the formation of functional synapses. Binding affinities vary by ~1000-fold between combinations of NL and NRX subtypes, which contribute to chemical and spatial specificities. Among major NL-NRX subtypes, NL2 and NRXβ1 have the lowest affinity. Here, we report structures of NL2 in complex with NRXβ1 in several conformations, along with NL2 alone. We identify mechanisms underlying the modulation of NL-NRX affinities and how the weaker NL2-NRXβ1 interaction alone is capable of tethering lipid membranes. We further show that NL2 and NRXβ1 cluster at intercellular junctions and recruit the master postsynaptic scaffolding protein gephyrin, which further clusters neurotransmitter receptors. These findings suggest a dual role of the NL2-NRXβ1 interaction—both as mechanical tether and as signaling receptor—to ensure correct spatial and chemical coordination between two cells to generate functional synapses.

Despite low affinities to neurexin due to structural features, neuroligin 2 promotes synapse formation through avidity effect.

## Linked entities

- **Genes:** ANGPTL4 (angiopoietin like 4) [NCBI Gene 51129], LOC105145924 (gephyrin-like) [NCBI Gene 105145924]
- **Proteins:** LOC105145924 (gephyrin-like)

## Full-text entities

- **Genes:** ARHGEF9 (Cdc42 guanine nucleotide exchange factor 9) [NCBI Gene 23229] {aka COLLYBISTIN, DEE8, EIEE8, HPEM-2, PEM-2, PEM2}, NXN (nucleoredoxin) [NCBI Gene 64359] {aka NRX, RRS2, TRG-4}, NLGN2 (neuroligin 2) [NCBI Gene 57555], GARS1 (glycyl-tRNA synthetase 1) [NCBI Gene 2617] {aka CMT2D, DSMAV, GARS, GlyRS, HMN5, HMN5A}, GPHN (gephyrin) [NCBI Gene 10243] {aka GEPH, GPH, GPHRYN, HKPX1, MOCODC}, SHBG (sex hormone binding globulin) [NCBI Gene 6462] {aka ABP, SBP, TEBG}, NLGN1 (neuroligin 1) [NCBI Gene 22871] {aka NL1, NLG1}, PHGDH (phosphoglycerate dehydrogenase) [NCBI Gene 26227] {aka 3-PGDH, 3PGDH, HEL-S-113, NLS, NLS1, PDG}, MMEL1 (membrane metalloendopeptidase like 1) [NCBI Gene 79258] {aka MMEL2, NEP2, NEPII, NL1, NL2, SEP}, MDGA1 (MAM domain containing glycosylphosphatidylinositol anchor 1) [NCBI Gene 266727] {aka GPIM, MAMDC3}, AOPEP (aminopeptidase O (putative)) [NCBI Gene 84909] {aka AP-O, APO, C90RF3, C9orf3, DYT31, ONPEP}, ECD (ecdysoneless cell cycle regulator) [NCBI Gene 11319] {aka GCR2, HSGT1, SGT1}
- **Diseases:** infection (MESH:D007239), epilepsy (MESH:D004827), autism (MESH:D001321), intellectual disabilities (MESH:D008607), neuropsychiatric disorders (MESH:D001523)
- **Chemicals:** ethane (MESH:D004980), oil (MESH:D009821), dimethyl sulfoxide (MESH:D004121), penicillin (MESH:D010406), PEG (MESH:D011092), phosphoinositides (MESH:D010716), glutathione (MESH:D005978), digitonin (MESH:D004072), KOH (MESH:C029943), His (MESH:D006639), DDM (MESH:C040358), water (MESH:D014867), glycine (MESH:D005998), NaCl (MESH:D012965), argon (MESH:D001128), streptomycin (MESH:D013307), H (MESH:D006859), HS (MESH:D006497), BacMam (-), glycosylphosphatidylinositol (MESH:D017261), carbon (MESH:D002244), Rhodamine-PE (MESH:C053685), imidazole (MESH:C029899), Lipofectamine (MESH:C086724), NBD-PE (MESH:C042077), MgCl2 (MESH:D015636), sodium butyrate (MESH:D020148), PFA (MESH:C003043), mPEG (MESH:C028210), CaCl2 (MESH:D002122), biotin (MESH:D001710), EDTA (MESH:D004492), lipid (MESH:D008055), Hepes (MESH:D006531), gold (MESH:D006046), sulfuric acid (MESH:C033158)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** H279Y, G282K, G282, H279
- **Cell lines:** BL21 — Homo sapiens (Human), EBV-related Burkitt lymphoma, Cancer cell line (CVCL_M639), NL2 — Neodiprion lecontei (Redheaded pine sawfly), Spontaneously immortalized cell line (CVCL_Z493), HEK — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_M624), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), Sf9 — Spodoptera frugiperda (Fall armyworm), Spontaneously immortalized cell line (CVCL_0549)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12985673/full.md

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Source: https://tomesphere.com/paper/PMC12985673