# A first-principles quantitative framework for how cohesin regulators shape chromatin loop extrusion

**Authors:** Zibin Huang, Xinyi Liu, Junjun Ding

PMC · DOI: 10.1016/j.xgen.2026.101187 · Cell Genomics · 2026-03-11

## TL;DR

This paper introduces a new model explaining how cohesin regulators control chromatin loop extrusion, leading to changes in genome structure.

## Contribution

The paper presents a first-principles framework for how cohesin regulators quantitatively shape chromatin loop extrusion.

## Key findings

- The model predicts regulator-dependent changes in motor kinetics during loop extrusion.
- It explains how chromatin contact patterns and chromosome-scale morphology are affected by cohesin regulators.

## Abstract

In this issue of Cell Genomics, Tortora and Fudenberg develop a first-principles framework in which loop extrusion is quantitatively regulated by multiple cohesin-associated factors, giving rise to “bursty extrusion.” This model predicts regulator-dependent changes in motor kinetics, chromatin contact patterns, and chromosome-scale morphology across spatial scales, providing a mechanistically grounded basis for quantitative modeling of 3D genome architecture.

In this issue of Cell Genomics, Tortora and Fudenberg develop a first-principles framework in which loop extrusion is quantitatively regulated by multiple cohesin-associated factors, giving rise to “bursty extrusion.” This model predicts regulator-dependent changes in motor kinetics, chromatin contact patterns, and chromosome-scale morphology across spatial scales, providing a mechanistically grounded basis for quantitative modeling of 3D genome architecture.

## Linked entities

- **Proteins:** vtd (verthandi)

## Full-text entities

- **Genes:** CTCF (CCCTC-binding factor) [NCBI Gene 10664] {aka CFAP108, FAP108, MRD21}, WAPL (WAPL cohesin release factor) [NCBI Gene 23063] {aka FOE, KIAA0261, WAPAL}, NIPBL (NIPBL cohesin loading factor) [NCBI Gene 25836] {aka CDLS, CDLS1, IDN3, IDN3-B, Scc2}
- **Chemicals:** Polymer (MESH:D011108)

## Full text

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## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12985368/full.md

## References

10 references — full list in the complete paper: https://tomesphere.com/paper/PMC12985368/full.md

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Source: https://tomesphere.com/paper/PMC12985368