# Metabolic and Microbial Community Profiles of Century-Old Pu-Erh Tea: An Integrative Metabolomic and Microbiomic Analysis

**Authors:** Huiqing Luo, Jianyang Fu, Yan Shen, Yuanfeng Chen, Siyu Zhou, Shikuan Zhao, Cheng Gong, Junlin Tai, Ya Wang, Wenshu Peng, Liang Yan, Chongye Fang, Ruijuan Yang

PMC · DOI: 10.3390/foods15050916 · Foods · 2026-03-06

## TL;DR

This study explores how century-old Pu-erh tea changes over time by analyzing its chemical and microbial makeup, revealing unique flavor compounds and microbial shifts.

## Contribution

The study provides new insights into the microbe-metabolite co-evolution in century-old Pu-erh tea using integrated metabolomic and microbiomic analysis.

## Key findings

- Long-term aging enriches hydrolyzable tannins, sucrose, and bipyrrole aromatic derivatives in century-old Pu-erh tea.
- Century-old samples show simplified bacterial communities and increased fungal evenness, with enrichment of Thermodesulfobacterium and unclassified fungi.
- Key bacterial genera like Paenibacillus and Bacillus correlate with flavor precursors such as sugars and phenolic acids.

## Abstract

As a uniquely Chinese post-fermented tea, Pu-erh tea undergoes profound changes in quality and flavor during aging, a process primarily driven by microbially mediated metabolic transformations. However, the patterns of microbe–metabolite co-evolution spanning a century-long timescale remain unclear. This study employed three samples—S (1920 raw Pu-erh tea), Y (1999 raw Pu-erh tea), and Q (2024 ripe Pu-erh tea)—integrating non-targeted metabolomics and microbiomics technologies to systematically analyze the characteristics of metabolites and microbial communities in century-old Pu-erh tea. The study elucidated the metabolic characteristics at the endpoint of long-term natural aging: the specific enrichment of hydrolyzable tannins, sucrose, and bipyrrole aromatic derivatives, providing a chemical basis for its unique “century-old charm”. Microbial community analysis indicated that long-term aging leads to simplified bacterial communities but increased fungal evenness, with the century-old sample specifically enriching for Thermodesulfobacterium and a large number of unclassified fungi. Multivariate statistics further constructed a microbe–metabolite interaction network, confirming significant correlations between key bacterial genera such as Paenibacillus and Bacillus and flavor precursors like sugars and phenolic acids.

## Linked entities

- **Chemicals:** sucrose (PubChem CID 5988)
- **Species:** Thermodesulfobacterium (taxon 1740), Paenibacillus (taxon 44249), Bacillus (taxon 1386)

## Full-text entities

- **Chemicals:** sucrose (MESH:D013395), tannins (MESH:D013634), sugars (MESH:D000073893), phenolic acids (MESH:C017616), Pu-Erh Tea (-)
- **Species:** Thermodesulfobacterium (genus) [taxon 1740], Paenibacillus (genus) [taxon 44249], Bacillus (genus) [taxon 55087]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12985185/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12985185/full.md

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Source: https://tomesphere.com/paper/PMC12985185