# Intracellular vesicle-mediated biomineralization of arsenic and barium by a sponge symbiotic bacterium

**Authors:** Shani Shoham, Celeste Weiss, Ray Keren, Adi Lavy, Iryna Polishchuk, Boaz Pokroy, Abdussalam Azem, Micha Ilan

PMC · DOI: 10.1093/ismeco/ycag039 · 2026-03-06

## TL;DR

A sponge symbiotic bacterium detoxifies arsenic and barium by storing them in intracellular vesicles and mineral granules.

## Contribution

The study reveals a novel detoxification mechanism involving intracellular vesicles and mineral granules in a symbiotic bacterium.

## Key findings

- Entotheonella cells contain membrane-enclosed granules rich in barium, arsenic, sulfur, calcium, and phosphorus.
- Intracellular vesicles enriched with arsenic and sulfur suggest roles in metal detoxification and transport.
- Proteomic analysis indicates ICVs originate from the bacterial outer membrane and contain detoxification-related proteins.

## Abstract

In their soluble forms, arsenic and barium are ubiquitous toxic elements. Mechanisms for their detoxification include reducing bioavailability by assimilation into organic forms or mineralization. It was previously found that Entotheonella sp., a bacterium common to the Red Sea sponge Theonella swinhoei (Demospongiae, Tetractinellida), accumulates these elements by mineralizing them intracellularly, thus acting as a detoxifying organ to the sponge host. Here, we utilize cryo-TEM and energy-dispersive spectroscopy to investigate the accumulated minerals. Our results show that Entotheonella cells possess an internal membrane-enclosing sphere-like granules that contains barium, arsenic, sulfur, calcium, and phosphorus in high concentrations. Moreover, the bacterial cytoplasm contains many intracellular vesicles (ICVs) enriched with arsenic and sulfur. The coexistence of sulfur and arsenic may suggest the presence of cysteine-containing metal-binding proteins responsible for arsenic uptake and separation within the bacterial cell. To examine that hypothesis, we developed a protocol for vesicle isolation and performed proteomic profiling. Based on the proteins found, ICVs likely originate from the bacteria's outer membrane and contain proteins of known functions, including the transport and detoxification of toxic metals. These findings enhance our understanding of Entotheonella sp. and its host Tamiops swinhoei's unique strategies for hyper-accumulating and neutralizing toxic elements.

## Linked entities

- **Chemicals:** arsenic (PubChem CID 5359596), barium (PubChem CID 5355457), sulfur (PubChem CID 5362487), calcium (PubChem CID 5460341), phosphorus (PubChem CID 139579), cysteine (PubChem CID 594)
- **Species:** Theonella swinhoei (taxon 37505), Demospongiae (taxon 6042), Tetractinellida (taxon 1779164), Tamiops swinhoei (taxon 226577)

## Full-text entities

- **Genes:** SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714] {aka ASV, SRC1, THC6, c-SRC, p60-Src}, HSP60 (chaperone ATPase HSP60) [NCBI Gene 850963] {aka CPN60, MIF4, MNA2}
- **Diseases:** toxicity (MESH:D064420)
- **Chemicals:** DOM (MESH:D000090422), iron (MESH:D007501), sucrose (MESH:D013395), S (MESH:D013455), chlorine (MESH:D002713), metal (MESH:D008670), arsenate (MESH:C025657), ATP (MESH:D000255), NaHCO3 (MESH:D017693), Arsenic (MESH:D001151), water (MESH:D014867), P (MESH:D010758), Ba2+ (MESH:C080430), K+ (MESH:D011188), nitrogen (MESH:D009584), NaCl (MESH:D012965), lipid (MESH:D008055), uranyl acetate (MESH:C005460), Na2SO4 (MESH:C012036), magnesium (MESH:D008274), Arsenite (MESH:C015001), Ca (MESH:D002118), Ca3(AsO4)2 (MESH:C045817), sodium arsenate (MESH:C009277), BaCO3 (-), phosphate (MESH:D010710), sulfate (MESH:D013431), arsenicals (MESH:D001152), peptides (MESH:D010455), C (MESH:D002244), Barite (MESH:D001466), ion (MESH:D007477), O (MESH:D010100), barium carbonate (MESH:C006685), heavy metals (MESH:D019216), PBS (MESH:D007854), KCl (MESH:D011189), cysteine (MESH:D003545), polyketides (MESH:D061065), Ba (MESH:D001464), sulfhydryl (MESH:D013438), phospholipids (MESH:D010743)
- **Species:** Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], PX clade (clade) [taxon 569578], Theonella swinhoei (species) [taxon 37505], Porifera (sponges, phylum) [taxon 6040], Candidatus Entotheonella (genus) [taxon 93171], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Synechococcus sp. (species) [taxon 1131], Tamiops swinhoei (species) [taxon 226577]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12981691/full.md

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Source: https://tomesphere.com/paper/PMC12981691