# High-Resolution Microscope-Mode Secondary Ion Mass Spectrometry Imaging

**Authors:** Yifeng Jia, Maria Elena Castellani, Kieran Cheung, Yuting Su, Michael Burt, Paul Blenkinsopp, Felicia M. Green, Mark Brouard

PMC · DOI: 10.1021/acs.analchem.5c07789 · Analytical Chemistry · 2026-02-24

## TL;DR

A new high-resolution SIMS microscope is developed for fast imaging of biological samples, capturing detailed molecular information in mouse brain tissue.

## Contribution

The novel SIMS instrument achieves high mass and spatial resolution using time-of-flight and pulsed ion extraction methods.

## Key findings

- The instrument provides mass resolutions of m/Δm ∼ 6900 with a fast scintillator screen.
- Spatial resolutions better than 5 μm were achieved under optimal conditions.
- Biologically relevant ions like phospholipids and amino acids were captured in mouse brain tissue.

## Abstract

We report the development
of a secondary ion mass spectrometry
(SIMS) microscope-mode imaging instrument suitable for a wide range
of applications in which high throughput is an advantage. By coupling
time-of-flight mass spectrometry with pulsed ion extraction methods,
the instrument can provide mass resolutions of m/Δm ∼ 2000 across a mass range of m/z

≳
 1000. We show that the use of an ion imaging
detector with a fast scintillator screen, yielding time-of-flight
time resolutions of a few nanoseconds, improves the mass resolution
further to m/Δm ∼ 6900.
Spatial resolutions of better than 5 μm were also obtained under
optimum conditions. We demonstrate the capability of the instrument
by imaging atomic and molecular ion species in mouse brain tissue
sections, capturing a range of biologically relevant ions, including
phospholipid and amino acid fragments, over millimeter length scales
within minutes.

## Linked entities

- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Chemicals:** amino acid (MESH:D000596), phospholipid (MESH:D010743)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12980498/full.md

## References

75 references — full list in the complete paper: https://tomesphere.com/paper/PMC12980498/full.md

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Source: https://tomesphere.com/paper/PMC12980498