# Unmasking genetic etiologies in neurodevelopmental disorders characterized by Cerebral Palsy: insights from integrative genomic approaches

**Authors:** Ayca Yigit, Ozlem Akgun-Dogan, Zeynep Ozkeserli, Gunseli Bayram Akcapınar, Semih Ayta, Pinar Gencpinar, Hulya Maras Genc, Busra Kutlubay, Bulent Kara, Hatice Gulhan Sozen, Nihat Bugra Agaoglu, Ozkan Ozdemir, Kaya Bilguvar, Ugur Ozbek

PMC · DOI: 10.3389/fneur.2026.1742186 · Frontiers in Neurology · 2026-02-23

## TL;DR

This study shows that genetic factors play a significant role in cerebral palsy and similar conditions, using genomic sequencing to identify rare mutations.

## Contribution

The study demonstrates the value of whole-exome and whole-genome sequencing in uncovering genetic causes of cerebral palsy.

## Key findings

- Pathogenic or likely pathogenic variants were found in 36.4% of patients with CP or CP-like phenotypes.
- Genes like SPAST, KIF1A, and SYNGAP1 were implicated in the genetic basis of CP.
- Genomic testing improved diagnostic accuracy and highlighted the genetic heterogeneity of CP.

## Abstract

Cerebral Palsy (CP) is characterized by permanent, non-degenerative motor function deficits with increasing evidence of genetic contributions. Although prenatal and perinatal risk factors are well recognized, the underlying etiopathology remains incompletely understood. This study aimed to improve diagnostic accuracy and elucidate the genetic architecture of CP and CP-like phenotypes through systematic genomic analyses.

Patients with clinically confirmed CP or CP-like presentations were recruited, and biological samples were stored in the ACU-Biobank. Whole-exome and whole-genome sequencing data were analyzed using a validated in-house pipeline incorporating comprehensive variant filtering, prioritization, and re-phenotyping.

Pathogenic or likely pathogenic variants were identified in 36.4% (24/66) of patients, while variants of uncertain significance (VUS) were detected in 25.8% (17/66). Identified variants involved genes such as SPAST, KIF1A, PLA2G6, CTNNB1, L1CAM, and SYNGAP1. These results demonstrate a substantial contribution of rare monogenic variants to CP and CP-like phenotypes, reflecting extensive genetic heterogeneity.

Our findings support the increasing evidence that genetic factors contribute significantly to CP etiology and emphasize the importance of integrating genomic testing into clinical evaluation. The systematic use of exome and genome sequencing improves diagnostic yield and enables genotype-informed classification, aiding targeted management and genetic counseling for affected individuals.

## Linked entities

- **Genes:** SPAST (spastin) [NCBI Gene 6683], KIF1A (kinesin family member 1A) [NCBI Gene 547], PLA2G6 (phospholipase A2 group VI) [NCBI Gene 8398], CTNNB1 (catenin beta 1) [NCBI Gene 1499], L1CAM (L1 cell adhesion molecule) [NCBI Gene 3897], SYNGAP1 (synaptic Ras GTPase activating protein 1) [NCBI Gene 8831]
- **Diseases:** Cerebral Palsy (MONDO:0006497)

## Full-text entities

- **Genes:** SYNGAP1 (synaptic Ras GTPase activating protein 1) [NCBI Gene 8831] {aka MRD5, RASA5, SYNGAP}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, SPAST (spastin) [NCBI Gene 6683] {aka ADPSP, FSP2, SPG4}, PLA2G6 (phospholipase A2 group VI) [NCBI Gene 8398] {aka CaI-PLA2, GVI, INAD1, IPLA2-VIA, NBIA2, NBIA2A}, L1CAM (L1 cell adhesion molecule) [NCBI Gene 3897] {aka CAML1, CD171, HSAS, HSAS1, HYCX, MASA}, KIF1A (kinesin family member 1A) [NCBI Gene 547] {aka ATSV, C2orf20, HSN2C, MRD9, NESCAVS, SPG30}
- **Diseases:** motor function deficits (MESH:D001289), neurodevelopmental disorders (MESH:D002658), CP (MESH:D002547)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12979860/full.md

## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC12979860/full.md

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Source: https://tomesphere.com/paper/PMC12979860