# Lung scRNA-seq reveals chronic inflammation and emphysemous phenotype in mice with osteogenesis imperfecta

**Authors:** Jennifer Zieba, Roya Bagheri, Alex Kot, Jorge H. Martin, Davis Wachtell, Sereen Wong, Maeve Mungovan, Caroline Wight, Deborah Krakow

PMC · DOI: 10.3389/fgene.2026.1713393 · 2026-02-26

## TL;DR

This study uses lung scRNA-seq in a mouse model of brittle bone disease to uncover chronic inflammation and emphysema-like changes, suggesting new therapeutic targets for lung complications in OI.

## Contribution

The study reveals chronic inflammation and altered lung cell dynamics in a mouse model of OI, identifying Scgb1a1 as a potential therapeutic target.

## Key findings

- Young Aga2 mice show increased AT2 to AT1 cell transition, while adults show decreased AT2 cell differentiation.
- Adult Aga2 lungs exhibit increased fibroblast activation and chronic inflammation with elevated neutrophil and monocyte numbers.
- Reduced Scgb1a1 expression in multiple lung cell types is linked to lung disease and could be a therapeutic target.

## Abstract

Osteogenesis imperfecta (OI), or brittle bone disease, is a rare congenital disorder characterized by bone fragility and increased fracture incidence mainly due to mutations in type I collagen or genes associated with collagen synthesis. Genetic and allelic heterogeneity underlie the phenotypic spectrum of OI yet all forms commonly feature early mortality stemming from pulmonary complications, the molecular cause for which has not been resolved. Using single-cell RNA sequencing (scRNAseq), we identified novel molecular and cellular mechanisms underlying the lung abnormalities observed in our Col1a1

Aga2/+
 (Aga2) mouse, which recapitulates a moderate form of OI. Pulmonary tissues in OI models have consistently displayed a histological emphysematous phenotype, however the origin of this and the effect on lung cell development and function remains unknown. Using scRNAseq data derived from young and adult Aga2 lungs, we found significantly increased AT2 to AT1 cell transition (cells necessary for alveolar structure and gas exchange) in young Aga2 mice but decreased AT2 cell differentiation in adults. Further, adult Aga2 lungs show increased fibroblast activation and differentiation. Finally, our scRNAseq analysis revealed a chronic inflammation phenotype in the Aga2 lung with increased neutrophil and monocyte numbers, IL1B and TNF pathway activation, NOD-like receptor signaling activation, and expression of the NLRP3 inflammasome. Most importantly, we saw a significant decrease in the expression of Scgb1a1 in immune, epithelial, and fibroblast cells. Decreased expression of Scgb1a1 is associated with multiple lung diseases such as emphysema, chronic obstructive pulmonary disease (COPD), and asthma and has become an important therapeutic target for chronic lung inflammation. Clinical treatments specific to pulmonary complications in OI are non-existent and our results reveal that chronic inflammation could be a target to prevent the pulmonary insufficiency and early mortality observed in OI patients.

## Linked entities

- **Genes:** COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277], SCGB1A1 (secretoglobin family 1A member 1) [NCBI Gene 7356], IL1B (interleukin 1 beta) [NCBI Gene 3553], TNF (tumor necrosis factor) [NCBI Gene 7124], NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548]
- **Diseases:** osteogenesis imperfecta (MONDO:0019019), emphysema (MONDO:0004849), chronic obstructive pulmonary disease (MONDO:0005002), asthma (MONDO:0004979)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Scgb1a1 (secretoglobin, family 1A, member 1) [NCBI Gene 22287] {aka CC10, CC16, CCSP, PCB-BP, UG, UGB}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Nlrp3 (NLR family, pyrin domain containing 3) [NCBI Gene 216799] {aka AGTAVPRL, AII/AVP, Cias1, FCAS, FCU, MWS}, Col1a1 (collagen, type I, alpha 1) [NCBI Gene 12842] {aka Col1a-1, Cola-1, Cola1, Mov-13, Mov13}
- **Diseases:** fracture (MESH:D050723), chronic inflammation (MESH:D007249), OI (MESH:D010013), emphysema (MESH:D004646), asthma (MESH:D001249), lung abnormalities (MESH:D008171), lung inflammation (MESH:D011014), COPD (MESH:D029424), bone fragility (MESH:C536063), congenital disorder (MESH:D009358), pulmonary insufficiency (MESH:D011665), emphysematous (MESH:D041882), chronic (MESH:D002908)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12978693/full.md

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Source: https://tomesphere.com/paper/PMC12978693