# Growth promotion of milk-associated Candida zeylanoides by a cyclic lipopeptide produced by Pseudomonas

**Authors:** Ina Wasmuth, Anan Ibrahim, Phil Köhler, Hrant Hovhannisyan, Marina Marcet-Houben, Toni Gabaldón, Soninkhishig Tsolmon, Christina Warinner, Pierre Stallforth

PMC · DOI: 10.1093/ismejo/wrag033 · 2026-02-20

## TL;DR

A bacterial compound from Pseudomonas promotes the growth of a milk yeast, which could improve dairy fermentation processes.

## Contribution

First report of a cyclic lipopeptide directly stimulating yeast growth in a dairy context.

## Key findings

- Tensin A, a cyclic lipopeptide from Pseudomonas, promotes the growth of Candida zeylanoides in milk.
- Transcriptomic analysis suggests glyoxylate metabolism may be involved in the growth-promoting effect.
- The CLP alters microbial composition in milk, as shown by 16S rRNA gene amplicon sequencing.

## Abstract

Milk has a rich microbiota that engages in complex interactions. These interactions can be mutualistic or antagonistic, shaping the microbial composition of dairy products and affecting fermentation, preservation, and product quality. In this study, we investigate the interaction between Pseudomonas bacteria and the yeast Candida zeylanoides in the context of traditional dairy fermentation. We identified a collection of cyclic lipopeptides (CLPs) from Pseudomonas sp. SM4, isolated from the traditional Mongolian dairy product öröm and elucidated the structure of six CLPs belonging to the amphisin family using a combination of bioinformatic predictions, mass spectrometry, Marfey’s analysis, nuclear magnetic resonance (NMR) spectroscopy, and X-ray crystallography. Milk-based bioassays and 16S rRNA gene amplicon sequencing analyses revealed changes in the microbial composition of milk due to the addition of the CLP tensin A and allowed us to identify its function in promoting the growth of C. zeylanoides, a yeast commonly found in dairy environments. Through transcriptomic analysis, we obtained preliminary insights into the potential metabolic pathways that may contribute to the growth-promoting effect, which indicates a role for the glyoxylate metabolism. This represents the first report of a CLP directly stimulating yeast growth. Understanding how Pseudomonas-derived lipopeptides modulate microbial communities, particularly by supporting yeasts relevant to dairy fermentations, could inform strategies for optimizing dairy fermentation processes like kefir production and improving the stability and quality of fermented dairy products.

## Linked entities

- **Species:** Pseudomonas sp. SM4 (taxon 3424177), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** ORA1 (oxidoreductase) [NCBI Gene 855266], MLS1 (malate synthase MLS1) [NCBI Gene 855606], ICL1 (isocitrate lyase 1) [NCBI Gene 856794]
- **Diseases:** tensins (MESH:D006223), infections (MESH:D007239)
- **Chemicals:** water (MESH:D014867), Lipopeptides (MESH:D055666), Gln (MESH:D005973), citrate (MESH:D019343), acetyl-CoA (MESH:D000105), FFAs (MESH:D005230), amphisin (MESH:C438267), C6 (MESH:C117224), phenazines (MESH:D010619), KCl (MESH:D011189), acetate (MESH:D000085), Glu (MESH:D018698), H (MESH:D006859), alcohol (MESH:D000438), DMSO (MESH:D004121), glyoxylate (MESH:C031150), malate (MESH:C030298), ethanol (MESH:D000431), glucose (MESH:D005947), galactose (MESH:D005690), Thr (MESH:D013912), YM medium (-), Dhb (MESH:C088694), NaCl (MESH:D012965), acid (MESH:D000143), sugar (MESH:D000073893), n-butanol (MESH:D020001), glycerol (MESH:D005990), isocitrate (MESH:C034219), Asp (MESH:D001224), lactose (MESH:D007785), MgSO4 (MESH:D008278), K2HPO4 (MESH:C013216), amino acid (MESH:D000596), Ser (MESH:D012694), agar (MESH:D000362), acetonitrile (MESH:C032159), fatty acid (MESH:D005227), carbohydrate (MESH:D002241), carbon (MESH:D002244)
- **Species:** Kluyveromyces marxianus (species) [taxon 4911], Flavobacterium succinicans (species) [taxon 29536], Prillingera fragicola (species) [taxon 181175], Dujonia oleophila (species) [taxon 45573], Plicaturopsis crispa [taxon 139390], Mucor (genus) [taxon 4830], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Salmonella enterica (species) [taxon 28901], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Dujonia railenensis (species) [taxon 45579], Bos taurus (bovine, species) [taxon 9913], Morchella sextelata (species) [taxon 1174677], Saccharomycetales incertae sedis (no rank) [taxon 241407], Cutaneotrichosporon cyanovorans (species) [taxon 1078942], Talaromyces siglerae (species) [taxon 2022152], Pseudomonas veronii (species) [taxon 76761], Cystofilobasidium (genus) [taxon 5410], Enterobacterales (order) [taxon 91347], Pantoea agglomerans (species) [taxon 549], Fungi (kingdom) [taxon 4751], Microascus stellatus (species) [taxon 2075419], Kluyveromyces marxianus var. marxianus (varietas) [taxon 374272], Chernovozyma aurita (species) [taxon 224031], Mucor racemosus (species) [taxon 4841], Debaryomyces hansenii (species) [taxon 4959], Dujonia boleticola (species) [taxon 45525], Tausonia pullulans (species) [taxon 82525], Brochothrix thermosphacta (species) [taxon 2756], Candida albicans (species) [taxon 5476], Streptococcus (genus) [taxon 1301], Candida tropicalis (species) [taxon 5482], Listeria monocytogenes (species) [taxon 1639], Bacillus subtilis (species) [taxon 1423], Bacillus cereus (species) [taxon 1396], Pseudomonas helmanticensis (species) [taxon 1471381], Janthinobacterium (genus) [taxon 29580], Leptospira sp. AB (species) [taxon 103236], Staphylococcus aureus (species) [taxon 1280], Pseudolactococcus raffinolactis (s__Lactococcus_A raffinolactis, species) [taxon 1366], Serratia fonticola (species) [taxon 47917], SM4 [taxon 699065], Lactobacillus johnsonii (species) [taxon 33959], Dujonia santamariae (species) [taxon 45583], Pseudomonas fragi (species) [taxon 296], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Malassezia sympodialis (species) [taxon 76777], Acinetobacter (genus) [taxon 469], Dujonia schatavii (species) [taxon 45587], Cylindrobasidium evolvens (species) [taxon 139106], Cystofilobasidium infirmominiatum (species) [taxon 89913], Torulaspora delbrueckii (species) [taxon 4950], Chernovozyma palmyrensis (species) [taxon 641393], Malassezia globosa (species) [taxon 76773], Homo sapiens (human, species) [taxon 9606], Pseudomonas sp. (species) [taxon 306], Dujonia zeylanoides (species) [taxon 5493], Malassezia restricta (species) [taxon 76775], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Cell lines:** CBS 11546 — Homo sapiens (Human), Transformed cell line (CVCL_GG13), HKI0770 — Homo sapiens (Human), Transformed cell line (CVCL_K529)

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12978640/full.md

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Source: https://tomesphere.com/paper/PMC12978640