# PARP-2 catalytic activity drives replication-ICL repair in an allele-specific manner during germline development

**Authors:** Xiaojing Ren, Anna Hu, Zifei Liu, Semin Kim, Hyun-Min Kim, Stefan Taubert, Stefan Taubert, Stefan Taubert, Stefan Taubert

PMC · DOI: 10.1371/journal.pgen.1012062 · 2026-03-05

## TL;DR

This study shows that the protein PARP-2 is crucial for DNA repair and genome stability in C. elegans, especially during germline development.

## Contribution

The study reveals that PARP-2 has a dual role in DNA repair and stress response regulation, with its catalytic activity being essential for genome stability.

## Key findings

- PARP-2 is essential for replication-coupled DNA repair and nucleolar signaling in C. elegans germline development.
- A catalytic-dead PARP-2 mutant causes more severe defects than the null allele, indicating its role in restraining stress responses.
- PARP-2 is enriched at fragile genomic loci, suggesting a constitutive surveillance role in maintaining genome stability.

## Abstract

Maintaining genome integrity in the germline is critical for fertility and organismal survival. Here, we identify C. elegans PARP-2 as an essential and non-redundant regulator of replication-coupled DNA repair. PARP-2 localizes to chromatin during germline development and is also present in the nucleolus; replication stress is associated with changes in its nucleolar distribution, linking fork perturbation to nucleolar signaling and ribosomal homeostasis. Loss of PARP-2 leads to embryonic lethality, larval arrest, and hypersensitivity to replication-blocking and crosslinking agents, accompanied by accumulation of recombination intermediates. Strikingly, a catalytic-dead mutant (E509K) causes even more severe defects than the null allele, including hyperactivation of DNA damage pathways and elevated apoptosis, revealing that PARP-2 enzymatic activity not only executes repair but also restrains excessive stress responses. Chromatin profiling further shows enrichment of PARP-2 at promoter-proximal, fragile loci, suggesting a constitutive surveillance role. Together, these findings establish PARP-2 as a multifunctional genome guardian that integrates catalytic and structural roles to maintain genome stability and nucleolar function, with implications for understanding PARP-associated disease mutations.

The ability to faithfully pass on genetic information is essential for fertility and survival. In this study, we show that the protein PARP-2 plays a central role in protecting the genome of the roundworm C. elegans. PARP-2 normally works during DNA replication, helping to repair problems that arise when the replication machinery stalls. We find that PARP-2 not only binds to chromatin in developing germ cells but is also present in the nucleolus, and that DNA replication stress is accompanied by changes in its nucleolar association. Animals that lack PARP-2 die early or stop growing, and they are very sensitive to DNA-damaging agents. Surprisingly, worms carrying a version of PARP-2 that has lost its enzymatic activity suffer even worse defects, including excessive activation of DNA damage responses and cell death. This shows that PARP-2 has a dual role: it helps repair DNA but also prevents stress pathways from overreacting. We also discovered that PARP-2 is often found near fragile regions of the genome, suggesting it constantly monitors genome stability.

## Linked entities

- **Genes:** PARP2 (poly(ADP-ribose) polymerase 2) [NCBI Gene 10038]
- **Proteins:** PARP2 (poly(ADP-ribose) polymerase 2)

## Full-text entities

- **Genes:** RBBP8 (RB binding protein 8, endonuclease) [NCBI Gene 5932] {aka COM1, CTIP, JAWAD, JWDS, RIM, SAE2}, rad-51 (DNA repair protein RAD51 homolog) [NCBI Gene 177914], FCD-2 [NCBI Gene 100380873], pif-1 (ATP-dependent DNA helicase;ATP-dependent DNA helicase PIF1) [NCBI Gene 171665], CHEK1 (checkpoint kinase 1) [NCBI Gene 1111] {aka CHK1, OZEMA21}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, Trl (Trithorax-like) [NCBI Gene 2768981] {aka Adf-2, Adf-2-519, Adf2, CG33261, CG9343, Dmel\CG33261}, Parp1 (Poly-(ADP-ribose) polymerase 1) [NCBI Gene 3355109] {aka BEST:LD21673, CG17685, CG17696, CG17718, CG40411, D.PARP}, PARP2 (poly(ADP-ribose) polymerase 2) [NCBI Gene 10038] {aka ADPRT2, ADPRTL2, ADPRTL3, ARTD2, PARP-2, pADPRT-2}, chk-1 (Serine/threonine-protein kinase chk-1) [NCBI Gene 3565921], tank-1 (Poly) [NCBI Gene 178623], IGH (immunoglobulin heavy locus) [NCBI Gene 3492] {aka IGD1, IGH.1@, IGH@, IGHD@, IGHDY1, IGHJ}, RAD51 (RAD51 recombinase) [NCBI Gene 5888] {aka BRCC5, FANCR, HRAD51, HsRad51, HsT16930, MRMV2}, tba-1 (Tubulin alpha chain) [NCBI Gene 172831], BP1 [NCBI Gene 474256], rpl-11.1 (Large ribosomal subunit protein uL5A) [NCBI Gene 178778], parg-1 (Poly(ADP-ribose) glycohydrolase 1;poly(ADP-ribose) glycohydrolase) [NCBI Gene 177683], C43E11.9 (60S ribosome subunit biogenesis protein NIP7 homolog) [NCBI Gene 172028], PARP12 (poly(ADP-ribose) polymerase family member 12) [NCBI Gene 64761] {aka ARTD12, MST109, MSTP109, ZC3H1, ZC3HDC1}, PPME1 (protein phosphatase methylesterase 1) [NCBI Gene 51400] {aka ABDH19, PME-1}, FANCD2 (FA complementation group D2) [NCBI Gene 2177] {aka FA-D2, FA4, FACD, FAD, FAD2, FANCD}, ATL1 (atlastin GTPase 1) [NCBI Gene 51062] {aka AD-FSP, ATL-1, FSP1, HSN1D, SPG3, SPG3A}, ARHGAP29 (Rho GTPase activating protein 29) [NCBI Gene 9411] {aka PARG1}, atm-1 (Serine/threonine-protein kinase ATM) [NCBI Gene 3565793], parp-2 (Poly) [NCBI Gene 3565967], elt-6 (Transcription factor elt-6) [NCBI Gene 176993], cpb-3 (Cytoplasmic polyadenylation element-binding protein 3) [NCBI Gene 172244], fcd-2 (FANCD2) [NCBI Gene 178418], Atl1 (atlastin GTPase 1) [NCBI Gene 73991] {aka 4930435M24Rik, Adfsp, Fsp1, Spg3, Spg3a}, iff-2 (Eukaryotic translation initiation factor 5A-2) [NCBI Gene 174367], GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, iff-1 (Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Translation elongation factor IF5A C-terminal domain-containing protein) [NCBI Gene 176373], atl-1 (Serine/threonine-protein kinase ATR;non-specific serine/threonine protein kinase) [NCBI Gene 179352], Rad51 (RAD51 recombinase) [NCBI Gene 19361] {aka Rad51a, Reca}, PARG (poly(ADP-ribose) glycohydrolase) [NCBI Gene 8505] {aka PARG99}, him-8 (C2H2-type domain-containing protein) [NCBI Gene 188247], parp-1 (Poly) [NCBI Gene 266823], TNKS (tankyrase) [NCBI Gene 8658] {aka ARTD5, PARP-5a, PARP5A, PARPL, TIN1, TINF1}
- **Diseases:** UV (MESH:C563466), Embryonic lethality (MESH:D020964), hatching defect (MESH:D000013), developmental (MESH:C567924), toxicity (MESH:D064420), HIM (MESH:D005058), arrest (MESH:D006323), Cancer (MESH:D009369), tumorigenesis (MESH:D063646), hypersensitivity (MESH:D004342), FA (MESH:D005199)
- **Chemicals:** doxorubicin (MESH:D004317), poly(ADP-ribose) (MESH:D011064), mitomycin C (MESH:D016685), puromycin (MESH:D011691), ADP-ribose (MESH:D000246), Cisplatin (MESH:D002945), acridine orange (MESH:D000165), M9 (-), TritonX100 (MESH:D017830), FITC (MESH:D016650), nitrogen (MESH:D009584), neocarzinostatin (MESH:D009353), PJ34 (MESH:C434926), Olaparib (MESH:C531550), purine (MESH:C030985), TRIzol (MESH:C411644), HN2 (MESH:D008466), DAPI (MESH:C007293), DMSO (MESH:D004121), calcium (MESH:D002118), glycine (MESH:D005998), Tween-20 (MESH:D011136), NAD+ (MESH:D009243), HU (MESH:D006918), IN (MESH:D007204), SDS (MESH:D012967), STOP (MESH:D014002), PVDF (MESH:C024865)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Homo sapiens (human, species) [taxon 9606], Caenorhabditis elegans (species) [taxon 6239], Mus musculus (house mouse, species) [taxon 10090], Drosophila melanogaster (fruit fly, species) [taxon 7227], C. elegans [taxon 328850], Diptera (flies, order) [taxon 7147]
- **Mutations:** E509, E988K, E509K, E509K, glutamate residue at position 988, E590K, E905K
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), FLAG::3xHA::PARP-2 — Homo sapiens (Human), Fibrosarcoma, Cancer cell line (CVCL_3715), pCHK1 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_YS94)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12978569/full.md

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Source: https://tomesphere.com/paper/PMC12978569