# RETRACTED: NFIC suppressed the development of Glioma via modulating the balance of SHP2/PI3K and NF-κB/PTEN Signaling

**Authors:** Hongen Bao, Kai Liu, Naikang Gao, Youle Su, Huiru Bai, Changwu Dou, Fenjun Jiang, Fei Wang, Zhiheng Lin, Javier S Castresana, Javier S Castresana

PMC · DOI: 10.1371/journal.pone.0341816 · 2026-03-11

## TL;DR

This study shows that NFIC suppresses glioma growth by regulating key signaling pathways and gene expression.

## Contribution

The novel finding is that NFIC inhibits glioma development by modulating SHP2/PI3K and NF-κB/PTEN signaling.

## Key findings

- NFIC binds to OGN and PTEN promoters, increasing their expression and suppressing SHP2/PI3K and NF-κB pathways.
- NFIC overexpression inhibits glioma cell proliferation and invasion by suppressing the PI3K/AKT pathway.
- NF-κB promotes glioma progression, while OGN and PTEN inhibit p-SHP2 expression.

## Abstract

The objective of this study is to elucidate the mechanism by which NFIC exerts its regulatory influence over NF-κB/PTEN, with a view to gaining insight into the processes underlying the proliferation and invasion of glioma cells.

The interactions between genes in gliomas were predicted and verified through bioinformatics analysis. The effect of NFIC on glioma development was detected via subcutaneous transplantation in nude mice. Protein expression levels of NFIC, OGN, NF-κB, SHP2, p-SHP2, PI3K, AKT, Cyclin A1, Cyclin D1, MMP-3, and MMP-9 were detected by western blot. The examination of tumour cell proliferation and invasion was conducted using the following assays: CCK-8, colony formation, scratch assay, Co-immunoprecipitation (Co-IP) experiment, Immunohistochemistry (IHC) experiment and Transwell.

NFIC binds to the promoter regions of OGN and PTEN and regulates their transcription, leading to increased expression of these two genes,while simultaneously limiting the expression of NF-κB, SHP2, p-SHP2, PI3K, AKT, Cyclin A1, Cyclin D1, MMP-3, and MMP-9. NF-κB promotes SHP2 expression, whereas OGN and PTEN inhibit p-SHP2 expression. NFIC inhibits the proliferation and invasion of glioma cells, while NF-κB promotes these processes.

The overexpression of NFIC has the capacity to inhibit the PI3K/AKT signalling pathway, a process facilitated by the promotion of the expression of OGN and PTEN. This, consequently, results in the inhibition of glioma proliferation and development.

## Linked entities

- **Genes:** NFIC (nuclear factor I C) [NCBI Gene 4782], OGN (osteoglycin) [NCBI Gene 4969], PTEN (phosphatase and tensin homolog) [NCBI Gene 5728], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], PTPN11 (protein tyrosine phosphatase non-receptor type 11) [NCBI Gene 5781], PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], ccna1.S (cyclin A1 S homeolog) [NCBI Gene 397885], ccnd1.S (cyclin D1 S homeolog) [NCBI Gene 379161], MMP3 (matrix metallopeptidase 3) [NCBI Gene 4314], MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318]
- **Proteins:** NFIC (nuclear factor I C), OGN (osteoglycin), NFKB1 (nuclear factor kappa B subunit 1), PTPN11 (protein tyrosine phosphatase non-receptor type 11), PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha), AKT1 (AKT serine/threonine kinase 1), ccna1.S (cyclin A1 S homeolog), ccnd1.S (cyclin D1 S homeolog), MMP3 (matrix metallopeptidase 3), MMP9 (matrix metallopeptidase 9)
- **Diseases:** Glioma (MONDO:0021042)

## Full-text entities

- **Genes:** Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, Mmp9 (matrix metallopeptidase 9) [NCBI Gene 17395] {aka B/MMP9, Clg4b, Gel B, MMP-9, pro-MMP-9}, PIK3R2 (phosphoinositide-3-kinase regulatory subunit 2) [NCBI Gene 5296] {aka MPPH, MPPH1, P85B, p85, p85-BETA, p85beta}, RAP1A (RAP1A, member of RAS oncogene family) [NCBI Gene 5906] {aka C21KG, G-22K, KREV-1, KREV1, RAP1, SMGP21}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, ERVK-15 (endogenous retrovirus group K member 15) [NCBI Gene 100616443] {aka P1.10, c7_C}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, NFIX (nuclear factor I X) [NCBI Gene 4784] {aka CTF, MALNS, MRSHSS, NF-I/X, NF1-X, NF1A}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, BLNK (B cell linker) [NCBI Gene 29760] {aka AGM4, BASH, BLNK-S, LY57, SLP-65, SLP65}, Ptpn11 (protein tyrosine phosphatase, non-receptor type 11) [NCBI Gene 19247] {aka 2700084A17Rik, PTP1D, PTP2C, SAP-2, SH-PTP2, SH-PTP3}, NFIB (nuclear factor I B) [NCBI Gene 4781] {aka CTF, HMGIC/NFIB, MACID, NF-I/B, NF1-B, NFI-B}, DCTN6 (dynactin subunit 6) [NCBI Gene 10671] {aka WS-3, WS3, p27}, Mmp3 (matrix metallopeptidase 3) [NCBI Gene 17392] {aka EMS-2, MMP-3, SL-1, SLN-1, SLN1, STR-1}, Pten (phosphatase and tensin homolog) [NCBI Gene 19211] {aka 2310035O07Rik, A130070J02Rik, B430203M17Rik, MMAC1, PTENbeta, TEP1}, HEY1 (hes related family bHLH transcription factor with YRPW motif 1) [NCBI Gene 23462] {aka BHLHb31, CHF2, HERP2, HESR1, HRT-1, NERP2}, Ccnd1 (cyclin D1) [NCBI Gene 12443] {aka CycD1, Cyl-1, PRAD1, bcl-1, cD1}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, NFIA (nuclear factor I A) [NCBI Gene 4774] {aka BRMUTD, C1DELp32p31, CTF, DEL1P32P31, NF-I/A, NF1-A}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, OGN (osteoglycin) [NCBI Gene 4969] {aka OG, OIF, SLRR3A}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, NFIC (nuclear factor I C) [NCBI Gene 4782] {aka CTF, CTF5, NF-I, NF-I/C, NF1-C, NFI}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, MMP3 (matrix metallopeptidase 3) [NCBI Gene 4314] {aka CHDS6, MMP-3, SL-1, STMY, STMY1, STR1}, ZEB1 (zinc finger E-box binding homeobox 1) [NCBI Gene 6935] {aka AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CST12P (cystatin 12, pseudogene) [NCBI Gene 106478911] {aka Cst, Ctes4, E2}, Ogn (osteoglycin) [NCBI Gene 18295] {aka 3110079A16Rik, OG, OIF, SLRR3A, mimecan, mimican}, Ccna1 (cyclin A1) [NCBI Gene 12427], CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, PTPN11 (protein tyrosine phosphatase non-receptor type 11) [NCBI Gene 5781] {aka BPTP3, CFC, JMML, METCDS, NS1, PTP-1D}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, Nfic (nuclear factor I/C) [NCBI Gene 18029] {aka 1110019L22Rik, 1500041O16Rik, NF1-C}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932], CHRNA7 (cholinergic receptor nicotinic alpha 7 subunit) [NCBI Gene 1139] {aka CHRNA7-2, NACHRA7, a7nAChR, nAChR7}, PIK3CD (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta) [NCBI Gene 5293] {aka APDS, IMD14, IMD14A, IMD14B, P110DELTA, PI3K}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, JAK2 (Janus kinase 2) [NCBI Gene 3717] {aka JTK10}, CCNA1 (cyclin A1) [NCBI Gene 8900] {aka CT146}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}
- **Diseases:** neurological disorders (MESH:D009461), respiratory distress (MESH:D012128), Tumor (MESH:D009369), anxiety (MESH:D001007), inflammatory (MESH:D007249), Glioma (MESH:D005910), melanoma (MESH:D008545), hepatoma (MESH:D006528), erythema (MESH:D004890), astrocytomas (MESH:D001254), GBM (MESH:D005909), brain cancer (MESH:D001932), breast cancer (MESH:D001943), systemic (MESH:D015619), brain glioma (MESH:C564230), dilated (MESH:D002311), OGD (MESH:C536050), infection (MESH:D007239), weight loss (MESH:D015431), Tumors of the Central Nervous System (MESH:D016543), hypothermia (MESH:D007035), metastasis (MESH:D009362), immunodeficient (MESH:D007153), Death (MESH:D003643), colorectal cancer (MESH:D015179), impaired mobility (MESH:D014086)
- **Chemicals:** SDS (MESH:D012967), water (MESH:D014867), CCK-8 (MESH:D012844), isoflurane (MESH:D007530), TBS (MESH:D013725), CO (MESH:D002248), xylene (MESH:D014992), paraffin (MESH:D010232), phosphatidylinositol (MESH:D010716), oxygen (MESH:D010100), PBS (MESH:D007854), DAB (MESH:C000469), PVDF (MESH:C024865), alcohol (MESH:D000438), CO2 (MESH:D002245), citrate (MESH:D019343), paraformaldehyde (MESH:C003043), agarose (MESH:D012685), nicotine (MESH:D009538), phosphatidylinositol (3,4,5)-triphosphate (MESH:C060974), KY2019056 (-), crystal violet (MESH:D005840), hematoxylin (MESH:D006416)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** CCK-8 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_2873), Hca-F — Mus musculus (Mouse), Hepatocellular carcinoma of the mouse, Cancer cell line (CVCL_D015), U251 — Homo sapiens (Human), Astrocytoma, Cancer cell line (CVCL_0021), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184)

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Source: https://tomesphere.com/paper/PMC12978455