# Novel donor-π-acceptor benzimidazole-based chromophores: synthesis, antitumor assessment, and pharmacokinetics

**Authors:** Salhah D. Al-Qahtani, Ghadah M. Al-Senani, Khaled M. Elattar

PMC · DOI: 10.1039/d6ra00254d · 2026-03-11

## TL;DR

Researchers designed and tested new benzimidazole-based chromophores with potential as anticancer and anti-angiogenic agents due to their cytotoxicity and strong VEGFR-2 binding.

## Contribution

The study introduces novel donor-π-acceptor benzimidazole hybrids with promising antitumor and pharmacokinetic properties.

## Key findings

- Chromophore 4a showed the highest cytotoxicity with IC50 values of 12.64 µM and 12.19 µM against HepG2 and PC3 cells.
- Hybrid 4b exhibited the strongest VEGFR-2 binding score, comparable to the reference drug sorafenib.
- Hybrids 2a and 4a demonstrated good pharmacokinetic properties, including high gastrointestinal absorption and blood–brain barrier permeability.

## Abstract

Targeted chromophores, 2-(N,N-dialkyl-/diaryl-aminophenyl)benzimidazole hybrids 2a, 2b, 4a, and 4b, were designed and synthesized. The designed hybrids were identified as donor-π-acceptor (D-π-A) structures, incorporating N,N-dialkyl/diarylamino groups as the donor moiety and nitro or pyridinyl Schiff-base groups as the acceptor moiety. The hybrids were found to exhibit significant solvent-dependent properties, especially in polar solvents such as DMSO, which enhanced their fluorescence properties. Conjugate 2a exhibited absorbance and fluorescence maxima at 390 and 528 nm, respectively, in DMSO, while hybrid 2b demonstrated absorbance and fluorescence maxima at 396 and 536 nm, respectively. Hybrids 4a and 4b exhibited similar solvent-dependent activity. The cytotoxicity of all the synthesized chromophores was tested against several human cancer cell lines using an MTT assay, and their inhibitory activity against VEGFR-2 was determined using an anti-phosphotyrosine-based quantitative kinase assay. Chromophore 4a exhibited the highest overall cytotoxicity, with IC50 = 12.64 ± 0.29 µM towards HepG2 cells and IC50 = 12.19 ± 0.30 µM towards PC3 cells. Meanwhile, the four targeted chromophores were tested towards VEGFR-2 using the reference sorafenib, which is a noticeable target in anti-angiogenic cancer therapy. The docking results revealed that hybrid 4b exhibited the strongest binding score, which was close to that of sorafenib (reference), suggesting that it shows the most promising profile. Analysis by SwissADME revealed that hybrids 2a and 4a exhibited good pharmacokinetic properties, such as high gastrointestinal absorption and blood–brain barrier permeability. In conclusion, the combined experimental and computational approach presented here suggests the potential of these benzimidazole chromophores as early leads for anticancer and anti-angiogenic agents.

Benzimidazole hybrids showed selective cytotoxicity against HepG2, PC3, and MCF-7 cancer cells with low toxicity to WI-38 cells. VEGFR-2 inhibition and docking confirmed strong binding, indicating promising anticancer and anti-angiogenic activity.

## Linked entities

- **Proteins:** KDR (kinase insert domain receptor)
- **Chemicals:** sorafenib (PubChem CID 216239), DMSO (PubChem CID 679)

## Full-text entities

- **Genes:** KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}
- **Diseases:** cytotoxicity (MESH:D064420), cancer (MESH:D009369)
- **Chemicals:** DMSO (MESH:D004121), 2-(N,N-dialkyl-/diaryl-aminophenyl)benzimidazole (-), MTT (MESH:C070243), phosphotyrosine (MESH:D019000), sorafenib (MESH:D000077157), benzimidazole (MESH:C031000)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

14 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12977370/full.md

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Source: https://tomesphere.com/paper/PMC12977370