# Biofilm Associated Persistence and Drug Tolerance in Mycobacteria Within Host Microenvironments

**Authors:** Lourdes Serrano Garcia, Cesar Augusto Roque‐Borda, Fernando Rogério Pavan, Marlus Chorilli

PMC · DOI: 10.1111/apm.70166 · 2026-03-10

## TL;DR

Mycobacteria in biofilms are hard to treat because they resist drugs and hide from the immune system, leading to persistent and recurring tuberculosis.

## Contribution

This review integrates current understanding of mycobacterial biofilm drug tolerance and evaluates novel therapeutic strategies to combat it.

## Key findings

- Mycobacterial biofilms create drug-tolerant microenvironments by restricting antibiotic access and shielding bacteria.
- Biofilm-associated persistence is linked to TB treatment failure and disease relapse in clinical and experimental settings.
- Peptide–antibiotic therapies and synergistic drug combinations show promise in overcoming biofilm-induced drug tolerance.

## Abstract

Biofilms formed by mycobacteria, particularly 
Mycobacterium tuberculosis
 (Mtb), represent a major challenge in tuberculosis (TB) treatment due to their highly organized structure and their capacity to induce phenotypic drug tolerance. These three‐dimensional bacterial aggregates are embedded in a self‐produced extracellular matrix that restricts antibiotic penetration and shields bacilli from host immune responses. The resulting spatial and physiological heterogeneity within biofilms generates microenvironments that favor slow‐growing or non‐replicating cells, markedly reducing the efficacy of conventional antimicrobial therapies. Increasing experimental and clinical evidence supports the presence of biofilm‐like mycobacterial communities in TB lesions, linking this growth mode to disease chronicity, treatment failure, and relapse. This review aims to provide an integrated overview of the biological and physiological states adopted by mycobacteria within biofilm microenvironments, with particular emphasis on the mechanisms underlying biofilm‐associated drug tolerance. In addition, it critically discusses therapeutic strategies designed to overcome this tolerance, focusing on synergistic antibiotic combinations and peptide–antibiotic therapies that directly disrupt biofilm architecture, enhance drug penetration, or sensitize biofilm‐embedded bacilli to antimicrobial killing.

## Linked entities

- **Diseases:** tuberculosis (MONDO:0018076), TB (MONDO:0018076)
- **Species:** Mycobacterium tuberculosis (taxon 1773)

## Full-text entities

- **Genes:** LAMB2 (laminin subunit beta 2) [NCBI Gene 3913] {aka LAMS, NPHS5, PIERS}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IL27 (interleukin 27) [NCBI Gene 246778] {aka IL-27, IL-27A, IL27A, IL27p28, IL30, p28}, TLR5 (toll like receptor 5) [NCBI Gene 7100] {aka MELIOS, SLE1, SLEB1, TIL3}, IL21 (interleukin 21) [NCBI Gene 59067] {aka CVID11, IL-21, Za11}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, EPCAM (epithelial cell adhesion molecule) [NCBI Gene 4072] {aka Ber-Ep4, BerEp4, DIAR5, EGP-2, EGP314, EGP40}, IL31RA (interleukin 31 receptor A) [NCBI Gene 133396] {aka CRL, CRL3, GLM-R, GLMR, GPL, IL-31RA}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL23A (interleukin 23 subunit alpha) [NCBI Gene 51561] {aka IL-23, IL-23A, IL23P19, P19, SGRF}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, ELN (elastin) [NCBI Gene 2006] {aka ADCL1, SVAS, WBS, WS}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}
- **Diseases:** osteomyelitis (MESH:D010019), granuloma (MESH:D006099), TB (MESH:D014376), RGM (MESH:C538458), bacterial (MESH:D001424), granulomatous disease (MESH:D006105), necrotic lesions (MESH:D009059), valve endocarditis (MESH:D004696), hypoxic (MESH:D002534), otitis media (MESH:D010033), chronic pulmonary disease (MESH:D002908), Infectious Diseases (MESH:D003141), hypoxia (MESH:D000860), prostatitis (MESH:D011472), tubercular (MESH:D014390), cystic fibrosis lung disease (MESH:C563237), chronic rhinosinusitis (MESH:D000092562), caseous necrosis (MESH:D009336), keratitis (MESH:D007634), death (MESH:D003643), urinary tract and kidney infections (MESH:C566906), M. abscessus  infections (MESH:D009165), Pulmonary infection (MESH:D012141), wounds (MESH:D014947), chronic inflammation (MESH:D007249), periodontitis (MESH:D010518), cytotoxicity (MESH:D064420), latent tuberculosis (MESH:D055985), meningitis (MESH:D008580), infected (MESH:D007239), bacteremia (MESH:D016470), NTM lung disease (MESH:D008171), diabetes mellitus (MESH:D003920)
- **Chemicals:** LPS (MESH:D008070), Peptide (MESH:D010455), trans-cinnamaldehyde (MESH:C012843), vancomycin (MESH:D014640), Iron (MESH:D007501), Lipid (MESH:D008055), cysteine (MESH:D003545), nucleotide (MESH:D009711), essential oils (MESH:D009822), levofloxacin (MESH:D064704), arabinose (MESH:D001089), trehalose dimycolate (MESH:D003311), AMP (MESH:D000249), imipenem (MESH:D015378), ATP (MESH:D000255), glutathione (MESH:D005978), polyphosphate (MESH:D011122), glucose (MESH:D005947), trehalose (MESH:D014199), ROS (MESH:D017382), PLGA (MESH:D000077182), glycolipids (MESH:D006017), beta-lactams (MESH:D047090), Tween 80 (MESH:D011136), silver (MESH:D012834), dithiothreitol (MESH:D004229), clofazimine (MESH:D002991), moxifloxacin (MESH:D000077266), Cellulose (MESH:D002482), tangeretin (MESH:C059006), N-acetylcysteine (MESH:D000111), pyrazinamide (MESH:D011718), silica (MESH:D012822), aminoglycosides (MESH:D000617), phosphate (MESH:D010710), Chitosan (MESH:D048271), oxygen (MESH:D010100), phloroglucinaldehyde (MESH:C535196), Zn (MESH:D015032), isoniazid (MESH:D007538), hydrogen peroxide (MESH:D006861), metal (MESH:D008670), INLP (-), clarithromycin (MESH:D017291), 2-AI (MESH:C014973), doxycycline (MESH:D004318), cefoxitin (MESH:D002440), gatifloxacin (MESH:D000077734), dihydroartemisinin (MESH:C039060), UDP-N-acetylglucosamine (MESH:D014537), azithromycin (MESH:D017963), maltose (MESH:D008320), trehalose monomycolate (MESH:C021099), mannose (MESH:D008358), carvacrol (MESH:C073316), c-di-GMP (MESH:C062025), amikacin (MESH:D000583), ciprofloxacin (MESH:D002939), mycolic acid (MESH:D009171), linezolid (MESH:D000069349)
- **Species:** Burkholderia cenocepacia (species) [taxon 95486], Cavia porcellus (domestic guinea pig, species) [taxon 10141], Mycolicibacterium fortuitum (species) [taxon 1766], Enterococcus faecalis (species) [taxon 1351], Moraxella catarrhalis (species) [taxon 480], Macaca (macaque, genus) [taxon 9539], Fungi (kingdom) [taxon 4751], Mycobacteriales (order) [taxon 85007], Streptococcus pneumoniae (species) [taxon 1313], Bacillus sp. CG (species) [taxon 1196795], Escherichia coli (E. coli, species) [taxon 562], Mycobacterium avium (species) [taxon 1764], Danio rerio (leopard danio, species) [taxon 7955], Mycobacterium intracellulare (species) [taxon 1767], Borreliella burgdorferi (Lyme disease spirochete, species) [taxon 139], Stenotrophomonas maltophilia (species) [taxon 40324], Mycolicibacterium smegmatis (species) [taxon 1772], Mycobacteroides chelonae (species) [taxon 1774], Aspergillus fumigatus (species) [taxon 746128], Mycobacteroides abscessus (species) [taxon 36809], Fusarium solani (species) [taxon 169388], Candida albicans (species) [taxon 5476], Mycobacterium tuberculosis variant bovis BCG (no rank) [taxon 33892], Haemophilus influenzae (species) [taxon 727], Klebsiella pneumoniae (species) [taxon 573], Mycobacterium avium complex sp. (species) [taxon 37162], Streptococcus sp. 'group A' (species) [taxon 36470], Clostridioides difficile (species) [taxon 1496], Staphylococcus epidermidis (species) [taxon 1282], Homo sapiens (human, species) [taxon 9606], Proteus mirabilis (species) [taxon 584], Mycobacterium marinum (species) [taxon 1781], Staphylococcus aureus (species) [taxon 1280], Vibrio cholerae (species) [taxon 666], Mycobacterium tuberculosis (species) [taxon 1773], Mus musculus (house mouse, species) [taxon 10090], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Pseudomonas aeruginosa (species) [taxon 287]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12974664/full.md

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Source: https://tomesphere.com/paper/PMC12974664