# Huntington’s disease LIG1 modifier variant increases ligase fidelity and suppresses somatic CAG repeat expansion

**Authors:** Eunhye Lee, Wonju Kim, David H. Beier, Yejin Lee, Marina Kovalenko, Faaiza Saif, Esaria Oliver, Bhairavi Srinageshwar, Ryan Murtha, Marissa A. Andrew, Andrew Jiang, Tammy Gillis, Brigitte Demelo, Jayla Ruliera, Diane Lucente, Seung Kwak, Ramee Lee, Ricardo Mouro Pinto, Marcy E. MacDonald, James F. Gusella, Patrick J. O’Brien, Vanessa C. Wheeler, Ihn Sik Seong

PMC · DOI: 10.1073/pnas.2518854123 · 2026-03-02

## TL;DR

A DNA Ligase 1 variant delays Huntington’s disease onset by improving DNA repair accuracy and reducing harmful genetic changes.

## Contribution

The study reveals how a specific LIG1 variant reduces CAG repeat expansion and offers a new therapeutic target for HD.

## Key findings

- The K845N variant increases DNA ligase fidelity toward mismatched substrates.
- The variant protects against oxidative stress and slows somatic CAG repeat expansion in HD mice.
- Altered LIG1 function may delay HD onset by reducing genomic damage in the brain.

## Abstract

We analyzed a missense variant in DNA Ligase 1 (K845N) that is associated with a profound delay in the onset of Huntington’s disease (HD). We find that K845N enhances substrate discrimination toward mismatched substrates, thus increasing repair fidelity, conferring protection against oxidative stress and slows somatic expansion of the HD CAG repeat. Our observations provide insight into underlying mechanisms of disease modification and suggest avenues that can be harnessed for disease-modifying therapeutic intervention.

Huntington’s disease (HD) is a fatal neurodegenerative disorder caused by inheriting an expanded CAG repeat tract in the huntingtin gene (HTT) that further expands in somatic cells over an individual’s lifetime. Genome-wide association studies have provided critical insight into factors that modify the course of disease. These include DNA repair genes that alter the rate of somatic expansion and other genes that do not appear to directly influence this process. One modifier gene is DNA ligase 1 (LIG1), in which a variant specifying a lysine to asparagine substitution (K845N) is associated with a profound (7 to 8 y) delay in the onset of motor signs. Here, we have taken a multifaceted approach to gain insight into the protective nature of this variant in HD. We demonstrate using in vitro ligase assays and enzyme kinetics that K845N enhances discrimination toward mismatched substrates and increases repair fidelity. Consistent with increased ligation fidelity, K845N confers protection against oxidative stress in cell-based assays. Finally, we demonstrate that the mouse LIG1 K843N orthologue suppresses somatic CAG expansion in HD knock-in mice. Overall, our data provide evidence that altered LIG1 function due to the K845N substitution may contribute to HD clinical delay by slowing somatic expansion in the brain and protecting the genome globally against damage. Significantly, our results provide a mechanistic foundation for considering DNA ligase fidelity as a therapeutic target in HD and potentially in other trinucleotide repeat disorders.

## Linked entities

- **Genes:** LIG1 (DNA ligase 1) [NCBI Gene 3978], HTT (huntingtin) [NCBI Gene 3064]
- **Proteins:** LIG1 (DNA ligase 1)
- **Diseases:** Huntington’s disease (MONDO:0007739)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** LIG3 (DNA ligase 3) [NCBI Gene 3980] {aka LIG2, LIG3alpha, MTDPS20}, Lig3 (ligase III, DNA, ATP-dependent) [NCBI Gene 16882] {aka D11Wsu78e}, RAD17 (RAD17 checkpoint clamp loader component) [NCBI Gene 5884] {aka CCYC, HRAD17, R24L, RAD17SP, RAD24}, Msh2 (mutS homolog 2) [NCBI Gene 17685], Pam (peptidylglycine alpha-amidating monooxygenase) [NCBI Gene 18484] {aka PHM}, SLC19A1 (solute carrier family 19 member 1) [NCBI Gene 6573] {aka CHMD, FOLT, IFC-1, IFC1, IMD114, MEGAF}, Msh3 (mutS homolog 3) [NCBI Gene 17686] {aka D13Em1, REP-1, Rep-3, Rep3}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Fan1 (FANCD2/FANCI-associated nuclease 1) [NCBI Gene 330554] {aka 6030441H18Rik, Mtmr15, mFAN1}, Mlh3 (mutL homolog 3) [NCBI Gene 217716], Lig1 (ligase I, DNA, ATP-dependent) [NCBI Gene 16881] {aka LigI}, LIG4 (DNA ligase 4) [NCBI Gene 3981] {aka LIG4S}, Mlh1 (mutL homolog 1) [NCBI Gene 17350] {aka 1110035C23Rik}, Htt (huntingtin) [NCBI Gene 15194] {aka C430023I11Rik, Hd, Hdh, IT15}, HTT (huntingtin) [NCBI Gene 3064] {aka HD, IT15, LOMARS}, LIG1 (DNA ligase 1) [NCBI Gene 3978] {aka IMD96, LIGI, hLig1}, APTX (aprataxin) [NCBI Gene 54840] {aka AOA, AOA1, AXA1, EAOH, EOAHA, FHA-HIT}, Lig4 (ligase IV, DNA, ATP-dependent) [NCBI Gene 319583] {aka 5830471N16Rik, tiny}
- **Diseases:** HD (MESH:D006816), cancer (MESH:D009369), behavioral disturbances (MESH:D001523), myotonic dystrophy type 1 (MESH:D009223), LIG1 Syndrome (MESH:C580473), autosomal dominant neurodegenerative disorder (MESH:D019636), pain (MESH:D010146), CAG (MESH:D030342), MF (MESH:D006316), immune deficiency (MESH:D007154), toxicity (MESH:D064420), immunodeficiency (MESH:D007153), motor dysfunction (MESH:D000068079), cognitive decline (MESH:D003072), Ataxia with Oculomotor Apraxia type 1 (MESH:C538013), AAO (MESH:C564653)
- **Chemicals:** EDTA (MESH:D004492), dA (MESH:C025953), bromophenol blue (MESH:D001978), Streptomycin (MESH:D013307), polyacrylamide (MESH:C016679), PNAS (MESH:D020135), T (MESH:D014316), menadione (MESH:D024483), NaCl (MESH:D012965), MgCl2 (MESH:D015636), FAM (MESH:C031179), 8-oxo-dGTP (MESH:C078206), ' phosphate (MESH:D010710), SDS (MESH:D012967), oligonucleotides (MESH:D009841), DTT (MESH:D004229), acrylamide (MESH:D020106), Trizol (MESH:C411644), urea (MESH:D014508), MOPS (MESH:C008550), 3' C:G (-), formamide (MESH:C031066), Penicillin (MESH:D010406), G418 (MESH:C010680), Coomassie Blue (MESH:C048139), A (MESH:D001151), CO2 (MESH:D002245), Glutamine (MESH:D005973), AMP (MESH:D000249), xylene cyanol (MESH:C048951), ATP (MESH:D000255)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** C with 1, K843, C > T, G > A, K843N, R768W, K843N, K568, lysine to asparagine, R305Q, lysine to asparagine, asparagine at position 843, G > T, 48121244-G-A, 48143543-C-T, 48127920-C-A, K568A, asparagine at position 845, C->A
- **Cell lines:** HEK 293 EV — Homo sapiens (Human), Clear cell renal cell carcinoma, Cancer cell line (CVCL_UY81), HEK — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_M624), 46BR1 — Homo sapiens (Human), DNA ligase I deficiency, Finite cell line (CVCL_L943), 293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12974472/full.md

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Source: https://tomesphere.com/paper/PMC12974472