# HES1 oscillations are required for cell cycle reentry in oestrogen receptor–positive breast cancer cells

**Authors:** Oliver Cottrell, Andrew Rowntree, Kunal Chopra, Eleanor Mackellar, Benjamin Noble, Hannah L. Dixon, Ciara Healy, Robert B. Clarke, Nancy Papalopulu

PMC · DOI: 10.1073/pnas.2520724123 · 2026-03-02

## TL;DR

This study shows that HES1 protein oscillations control dormancy and reactivation in breast cancer cells, offering a new way to prevent cancer recurrence.

## Contribution

The study reveals that HES1 oscillations are essential for cell cycle reentry in ER+ breast cancer cells.

## Key findings

- HES1 oscillations change during dormancy and reactivation in ER+ breast cancer cells.
- Disrupting HES1 oscillations prevents cell cycle reentry and induces cell death.
- Maintaining HES1 levels during reentry upregulates p21 and impairs cell cycle progression.

## Abstract

Breast cancer can recur years after initial treatment due to reactivation of dormant tumor cells. Understanding how these cells exit dormancy is crucial for preventing relapse. We investigated HES1, a transcription factor with rhythmic protein oscillations, and its role in regulating quiescence in estrogen receptor-positive (ER+) breast cancer cells. Using live-cell imaging and a reversible cell cycle arrest model, we show that HES1 dynamics change during dormancy and reactivation, and that disrupting these oscillations prevents cell cycle reentry and induces cell death. These findings reveal HES1 protein dynamics as a potential therapeutic vulnerability and highlight a promising strategy to target dormant cancer cells to prevent their reactivation.

Long-term recurrence in breast cancer is driven by reactivation of dormant disseminated tumor cells (DTCs) and remains a major clinical challenge, particularly in estrogen receptor–positive (ER+) tumors. This process is underpinned by regulation of the cell cycle machinery that controls quiescence maintenance and exit. HES1, a Notch pathway transcription factor, regulates key cell cycle genes and has been shown to demonstrate protein expression oscillations. Here, we sought to establish whether HES1 oscillations may regulate ER+ cancer cell quiescence and reactivation. To investigate this, we developed a fundamental in vitro model of cell cycle arrest and reentry based on reversible CDK4/6 inhibition (CDK4/6i) with palbociclib, compatible with quantitative single-cell live-imaging of a knock-in endogenous HES1 reporter. Consistent with earlier findings, HES1 exhibited ~24 h protein oscillations in cycling cells demonstrating a reproducible dip in protein expression prior to S-Phase. During CDK4/6i-mediated arrest, the ~24 h HES1 oscillation was lost, HES1 levels were maintained at a moderately higher level and HES1 exhibited smaller dips. Similar changes were observed in unperturbed, spontaneously quiescent cells. Following release from CDK4/6i and cell cycle reentry, these alterations were reversed and the characteristic G1/S HES1 dip was observed. Preventing this dip at the point of release, by inducibly sustaining HES1 with a Tet-On system, upregulated the cell cycle inhibitor p21, impeded cell cycle reentry and induced cell death. These findings suggest that manipulating HES1 dynamics could represent a promising therapeutic approach to prevent reactivation of dormant tumor cells.

## Linked entities

- **Genes:** HES1 (hes family bHLH transcription factor 1) [NCBI Gene 3280], CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026], Cdk4 (Cyclin-dependent kinase 4) [NCBI Gene 36854]
- **Proteins:** HES1 (hes family bHLH transcription factor 1)
- **Chemicals:** palbociclib (PubChem CID 5330286)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, UBC (ubiquitin C) [NCBI Gene 7316] {aka HMG20}, NEUROG3 (neurogenin 3) [NCBI Gene 50674] {aka Atoh5, Math4B, NGN-3, bHLHa7, ngn3}, NEUROG2 (neurogenin 2) [NCBI Gene 63973] {aka Atoh4, Math4A, NGN2, bHLHa8, ngn-2}, ASCL1 (achaete-scute family bHLH transcription factor 1) [NCBI Gene 429] {aka ASH1, HASH1, MASH1, bHLHa46}, hes1.S (hes family bHLH transcription factor 1 S homeolog) [NCBI Gene 379073] {aka Xhairy1, hairy1, hes-1, hes1, hes1-a, hes1-b}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}, DCTN6 (dynactin subunit 6) [NCBI Gene 10671] {aka WS-3, WS3, p27}, PHGDH (phosphoglycerate dehydrogenase) [NCBI Gene 26227] {aka 3-PGDH, 3PGDH, HEL-S-113, NLS, NLS1, PDG}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, Cdkn1a (cyclin dependent kinase inhibitor 1A) [NCBI Gene 12575] {aka CAP20, CDKI, CIP1, Cdkn1, P21, SDI1}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, HES6 (hes family bHLH transcription factor 6) [NCBI Gene 55502] {aka C-HAIRY1, HES-6, bHLHb41, bHLHc23}, NR2F1 (nuclear receptor subfamily 2 group F member 1) [NCBI Gene 7025] {aka BBOAS, BBSOAS, COUP-TFI, COUPTF1, EAR-3, EAR3}, HES1 (hes family bHLH transcription factor 1) [NCBI Gene 3280] {aka HES-1, HHL, HRY, bHLHb39}, Hes1 (hes family bHLH transcription factor 1) [NCBI Gene 15205] {aka Hry, bHLHb39}, PCNA (proliferating cell nuclear antigen) [NCBI Gene 5111] {aka ATLD2}, E2F1 (E2F transcription factor 1) [NCBI Gene 1869] {aka E2F-1, RBAP1, RBBP3, RBP3}, HES5 (hes family bHLH transcription factor 5) [NCBI Gene 388585] {aka bHLHb38}, DLL1 (delta like canonical Notch ligand 1) [NCBI Gene 28514] {aka DELTA1, DL1, Delta, NEDBAS}, cdk4.S (cyclin-dependent kinase 4 S homeolog) [NCBI Gene 379406] {aka cdk4, cdk4.L, xcdk4}, notch1.S (notch 1 receptor S homeolog) [NCBI Gene 394367] {aka Xotch, notch, notch-1, notch1, notch1-a, x-notch-1}, cdk2.S (cyclin-dependent kinase 2 S homeolog) [NCBI Gene 399314] {aka cdk2, eg1}, CCNE2 (cyclin E2) [NCBI Gene 9134] {aka CYCE2}
- **Diseases:** hypoxia (MESH:D000860), tumorigenesis (MESH:D063646), cancer (MESH:D009369), necrosis (MESH:D009336), SND (MESH:D005598), Breast Cancer (MESH:D001943), metastases (MESH:D009362)
- **Chemicals:** EdU (MESH:C022811), PNAS (MESH:D020135), Palbociclib (MESH:C500026), DHB (MESH:C003870), Doxycycline (MESH:D004318), DMSO (MESH:D004121), Dox (MESH:D004317)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Xenopus laevis (African clawed frog, species) [taxon 8355], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), MCF-7s — Mus musculus (Mouse), Hybridoma (CVCL_U609), SUM149 — Homo sapiens (Human), Breast inflammatory carcinoma, Cancer cell line (CVCL_3422)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12974427/full.md

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Source: https://tomesphere.com/paper/PMC12974427