# Integrating bioinformatic prediction and the “gut microbiota-inflammation-skin axis” to decipher the mechanisms of quercetin (from Evodia rutaecarpa) in diabetic wound healing

**Authors:** Zhixuan Huang, Jian Liu, Xu Zheng, Xinrong Geng, Jinlong Tan, Yangwen Ai, Hui Li, Dongyue Zhou

PMC · DOI: 10.3389/fimmu.2026.1755280 · 2026-02-24

## TL;DR

This study shows that quercetin from Evodia rutaecarpa helps heal diabetic wounds by reducing inflammation and improving blood vessel growth through the gut-microbiota-skin connection.

## Contribution

The study reveals a novel mechanism of quercetin in diabetic wound healing via the gut microbiota-inflammation-skin axis.

## Key findings

- Que treatment accelerated wound healing and improved glucose and lipid metabolism in diabetic rats.
- Que modulated gut microbiota, and fecal microbiota transplantation from treated rats replicated healing effects.
- Que stabilized HIF1α and upregulated VEGF, promoting angiogenesis and reducing inflammation.

## Abstract

Diabetic foot ulcer (DFU) is a serious complication of diabetes with impaired healing. This study focused on the herbal medicine Evodia rutaecarpa as a case to investigate the mechanisms of diabetic wound healing via the “gut microbiota–inflammation–skin axis”. We specifically aimed to elucidate the role of its core bioactive flavonoid, quercetin (Que), whose therapeutic potential in this context remains underexplored.

In vitro, the direct interaction between Que and HIF1α was assessed by cellular thermal shift assay, and its functional effect on the HIF1α/VEGF pathway was evaluated in a lipopolysaccharide-induced RAW264.7/HUVEC co-culture system. In vivo, a streptozotocin-induced diabetic rat model with full-thickness dorsal wounds was treated with Que. Wound healing rates, metabolic parameters, systemic inflammation, and gut microbiota composition were analyzed. The causal role of the gut microbiota was further tested using fecal microbiota transplantation from Que-treated donors to diabetic recipient rats, and the biological activity of resulting drug-containing serum was assessed in HUVEC and RAW264.7 cell cultures.

Que was identified as a principal active component of E. rutaecarpa with predicted binding affinity for key targets involved in inflammatory and hypoxic responses. In vitro, Que directly bound to and stabilized HIF1α protein and upregulated the expression of both HIF1α and VEGF in HUVECs under inflammatory co-culture conditions. In diabetic rats, Que treatment significantly accelerated wound closure, improved systemic glucose and lipid metabolism, reduced serum levels of TNF-α and IL-1β, and modulated the gut microbiota structure. FMT from Que-treated rats replicated the pro-healing effects, enhancing angiogenesis and collagen deposition in wounds, and reducing tissue inflammation. Consistently, serum derived from the FMT-Que group promoted HUVEC migration and tube formation, and attenuated the pro-inflammatory cytokine expression in RAW264.7 cells.

This study demonstrated that Que promoted diabetic wound healing by modulating the “gut microbiota–inflammation–skin axis”, thereby reducing systemic inflammation and enhancing local angiogenesis.

Integrating Bioinformatic Prediction and the "Gut Microbiota-Inflammation-Skin Axis" to Decipher the Mechanisms of Quercetin (from Evodia rutaecarpa) in Diabetic Wound Healing. The graphical abstract of this article was drawn by biorender (www.biorender.com).Infographic illustrates Evodia rutaecarpa and its active compound Que, highlighting network pharmacology data, and schematic flow showing intervention in mice via gut-skin axis, fecal microbiota transplantation, modulating inflammation and angiogenesis to promote diabetic wound healing through HIF-1α/VEGF signaling and immune cell regulation.

Integrating Bioinformatic Prediction and the "Gut Microbiota-Inflammation-Skin Axis" to Decipher the Mechanisms of Quercetin (from Evodia rutaecarpa) in Diabetic Wound Healing. The graphical abstract of this article was drawn by biorender (www.biorender.com).

## Linked entities

- **Genes:** HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091], VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422], TNF (tumor necrosis factor) [NCBI Gene 7124], IL1B (interleukin 1 beta) [NCBI Gene 3553]
- **Proteins:** HIF1A (hypoxia inducible factor 1 subunit alpha), VEGFA (vascular endothelial growth factor A)
- **Chemicals:** quercetin (PubChem CID 5280343), streptozotocin (PubChem CID 29327)
- **Diseases:** diabetes (MONDO:0005015)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Hif1a (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 29560] {aka HIF1-alpha, MOP1}, Vegfa (vascular endothelial growth factor A) [NCBI Gene 83785] {aka VEGF-A, VEGF111, VEGF164, VPF, Vegf}, Tnf (tumor necrosis factor) [NCBI Gene 24835] {aka RATTNF, TNF-alpha, Tnfa}, Il1b (interleukin 1 beta) [NCBI Gene 24494] {aka IL-1F2}
- **Diseases:** DFU (MESH:D017719), hypoxic (MESH:D002534), inflammation (MESH:D007249), diabetes (MESH:D003920)
- **Chemicals:** lipopolysaccharide (MESH:D008070), lipid (MESH:D008055), glucose (MESH:D005947), flavonoid (MESH:D005419), streptozotocin (MESH:D013311), Que (MESH:D011794)
- **Species:** Tetradium ruticarpum (species) [taxon 354523], Rattus norvegicus (brown rat, species) [taxon 10116]

## Figures

14 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12974265/full.md

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Source: https://tomesphere.com/paper/PMC12974265