# Prognostic impact of myelodysplasia-related gene mutations in ELN-2022 favorable-risk acute myeloid leukemia subtypes

**Authors:** Lulu Zhang, Shuangwei Ying, Fang Fang, Qian Li, Furun An, Jingwen Li, Jie Sun, Weiyan Zheng, Zhimin Zhai, Yuanyuan Zhu

PMC · DOI: 10.1080/07853890.2026.2636337 · 2026-03-09

## TL;DR

This study examines how myelodysplasia-related gene mutations affect outcomes in patients with favorable-risk acute myeloid leukemia.

## Contribution

The study identifies that a high mutation burden of myelodysplasia-related genes, not single mutations, is linked to worse survival in favorable-risk AML.

## Key findings

- Patients with two or more myelodysplasia-related gene mutations had significantly poorer leukemia-free survival.
- A single myelodysplasia-related gene mutation did not significantly impact overall or leukemia-free survival.
- Higher mutation burden of myelodysplasia-related genes is independently associated with worse leukemia-free survival.

## Abstract

The 2022 European Leukemia Net (ELN) risk stratification categorizes acute myeloid leukemia (AML) with myelodysplasia-related gene (MRG) mutations - including ASXL1, BCOR, EZH2, RUNX1, SF3B1, SRSF2, STAG2, U2AF1 and/or ZRSR2 - as “adverse-risk”. However, the prognostic relevance of MRG mutations in patients with favorable-risk AML remains uncertain.

In this study, we analyzed a cohort of 221 adult patients with de novo favorable-risk AML. Risk groups were classified according to the 2022 European Leukemia Net guideline.

A total of 47 AML patients (21.3%) harbored MRG mutations. The presence of MRG mutations was associated with older age (57 vs. 49, p = 0.005), lower white blood cell count (6.9 vs. 14.5, p = 0.015), and the presence of TET2 (27.7% vs. 10.9%, p = 0.004), MPL (6.4% vs. 0.6%, p = 0.031), and ETV6 (6.4% vs. 1.1%, p = 0.066) mutations. Our findings indicated that the presence of MRG mutations did not significantly impact 2-year overall survival (OS) (75.2% vs. 69.4%, p = 0.285) or leukemia-free survival (LFS) (58.9% vs. 52.5%, p = 0.640). However, patients with two or more MRG mutations had significantly poorer LFS than those with one MRG mutation (p = 0.004) or without MRG mutations (p = 0.001). By multivariable analysis, ≥2 MRG mutations was independently associated with worse LFS.

The presence of a single MRG mutation did not confer a worse prognosis in favorable-risk AML, whereas a high MRG mutation burden (≥2 mutations) was independently associated with poorer LFS. This study suggests that quantifying the MRG mutation burden may inform risk stratification in this patient population.

## Linked entities

- **Genes:** ASXL1 (ASXL transcriptional regulator 1) [NCBI Gene 171023], BCOR (BCL6 corepressor) [NCBI Gene 54880], EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146], RUNX1 (RUNX family transcription factor 1) [NCBI Gene 861], SF3B1 (splicing factor 3b subunit 1) [NCBI Gene 23451], SRSF2 (serine and arginine rich splicing factor 2) [NCBI Gene 6427], STAG2 (STAG2 cohesin complex component) [NCBI Gene 10735], U2AF1 (U2 small nuclear RNA auxiliary factor 1) [NCBI Gene 7307], ZRSR2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2) [NCBI Gene 8233], TET2 (tet methylcytosine dioxygenase 2) [NCBI Gene 54790], MPL (MPL proto-oncogene, thrombopoietin receptor) [NCBI Gene 4352], ETV6 (ETS variant transcription factor 6) [NCBI Gene 2120]
- **Diseases:** acute myeloid leukemia (MONDO:0015667), myelodysplasia (MONDO:0018881)

## Full-text entities

- **Genes:** GATA2 (GATA binding protein 2) [NCBI Gene 2624] {aka DCML, IMD21, MONOMAC, NFE1B}, TET2 (tet methylcytosine dioxygenase 2) [NCBI Gene 54790] {aka IMD75, KIAA1546, MDS}, JAK3 (Janus kinase 3) [NCBI Gene 3718] {aka JAK-3, JAK3_HUMAN, JAKL, L-JAK, LJAK}, WT1 (WT1 transcription factor) [NCBI Gene 7490] {aka AWT1, GUD, NPHS4, WAGR, WIT-2, WT-1}, KDM6A (lysine demethylase 6A) [NCBI Gene 7403] {aka KABUK2, UTX, bA386N14.2}, CEBPA (CCAAT enhancer binding protein alpha) [NCBI Gene 1050] {aka C/EBP-alpha, CEBP}, MAS1L (MAS1 proto-oncogene like, G protein-coupled receptor) [NCBI Gene 116511] {aka MAS-L, MRG, dJ994E9.2}, ASXL2 (ASXL transcriptional regulator 2) [NCBI Gene 55252] {aka ASXH2, SHAPNS}, U2AF1 (U2 small nuclear RNA auxiliary factor 1) [NCBI Gene 7307] {aka FP793, RN, RNU2AF1, U2AF35, U2AFBP}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, ETV6 (ETS variant transcription factor 6) [NCBI Gene 2120] {aka TEL, TEL/ABL, THC5}, MPL (MPL proto-oncogene, thrombopoietin receptor) [NCBI Gene 4352] {aka C-MPL, CD110, MPLV, THCYT2, THPOR, TPOR}, FLT3 (fms related receptor tyrosine kinase 3) [NCBI Gene 2322] {aka CD135, FLK-2, FLK2, STK1}, SRSF2 (serine and arginine rich splicing factor 2) [NCBI Gene 6427] {aka PR264, SC-35, SC35, SFRS2, SFRS2A, SRp30b}, RUNX1 (RUNX family transcription factor 1) [NCBI Gene 861] {aka AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1}, DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788] {aka DNMT3A2, HESJAS, M.HsaIIIA, TBRS}, SF3B1 (splicing factor 3b subunit 1) [NCBI Gene 23451] {aka Hsh155, MDS, PRP10, PRPF10, SAP155, SF3b155}, NF1 (neurofibromin 1) [NCBI Gene 4763] {aka NFNS, VRNF, WSS}, ASXL1 (ASXL transcriptional regulator 1) [NCBI Gene 171023] {aka BOPS, MDS}, KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, RAD21 (RAD21 cohesin complex component) [NCBI Gene 5885] {aka CDLS4, HR21, HRAD21, MCD1, MGS, NXP1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, STAG2 (STAG2 cohesin complex component) [NCBI Gene 10735] {aka HPE13, MKMS, NEDXCF, SA-2, SA2, SCC3B}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, JAK2 (Janus kinase 2) [NCBI Gene 3717] {aka JTK10}, CSF3R (colony stimulating factor 3 receptor) [NCBI Gene 1441] {aka CD114, GCSFR, SCN7}, ZRSR2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2) [NCBI Gene 8233] {aka OFD21, U2AF1-RS2, U2AF1L2, U2AF1RS2, URP, ZC3H22}, NPM1 (nucleophosmin 1) [NCBI Gene 4869] {aka B23, NPM}, BCOR (BCL6 corepressor) [NCBI Gene 54880] {aka ANOP2, MAA2, MCOPS2}, IDH2 (isocitrate dehydrogenase (NADP(+)) 2) [NCBI Gene 3418] {aka D2HGA2, ICD-M, IDH, IDH-2, IDHM, IDP}
- **Diseases:** dysplasia (MESH:D015792), Myeloid Neoplasms (MESH:D009369), myelodysplasia (MESH:D009436), AML (MESH:D015470), MDS (MESH:D009190), death (MESH:D003643), LFS (MESH:D007938), toxicity (MESH:D064420)
- **Chemicals:** anthracycline (MESH:D018943), venetoclax (MESH:C579720), HAA (-), aclarubicin (MESH:D015250), cytarabine (MESH:D003561), homoharringtonine (MESH:D000077863), azacytidine (MESH:D001374)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12973831/full.md

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Source: https://tomesphere.com/paper/PMC12973831