# Distinct immune microenvironments in ovarian cancer subtypes indicate potential for immunotherapies

**Authors:** Asger Meldgaard Frank, Elias Carlsson, Huaqiang Ouyang, Lina Olsson, Constantina Claudia Mateoiu, Sara Ek, Karin Sundfeldt, Anna Gerdtsson

PMC · DOI: 10.1186/s12967-026-07879-8 · 2026-02-21

## TL;DR

This study identifies distinct immune environments in different ovarian cancer subtypes, suggesting opportunities for targeted immunotherapies.

## Contribution

The paper introduces spatially resolved molecular profiling to uncover immune-regulatory targets and prognostic markers in rare ovarian cancer subtypes.

## Key findings

- STING, CTLA-4, PD-L1, CD40, IDO1, VISTA, and B7-H3 are immune targets associated with specific ovarian cancer subtypes.
- In high-grade serous ovarian cancer, SMA and PD-L1 expression are strong prognostic indicators.
- CD8+ T-cell proximity to tumor cells correlates with improved prognosis and immune cell infiltration.

## Abstract

To enable immunotherapy for ovarian cancers, precision targets for immune priming as well as patient stratification approaches are required. The tumor microenvironment in particularly the rare subtypes of low-grade serous, mucinous, clear cell and endometrioid ovarian cancer, remains poorly characterized, and these tumors have been largely ignored in the immuno-oncology setting.

We performed spatially resolved molecular profiling of 78 tumor and immune protein markers in defined tissue regions from 254 ovarian cancer patients of mixed histologies, using GeoMx. Network graph analysis was applied to compute spatial statistics from multiplex immunofluorescence images. GeoMx-compatible softwares were developed for data processing and analysis, based on linear mixed effect modelling, survival analysis and machine learning.

Immune-regulatory targets associated with specific subtypes included STING in low-grade serous; CTLA-4 and PD-L1 in mucinous; CD40, IDO1 and VISTA in clear cell; and B7-H3 in endometrioid ovarian carcinomas. In high-grade serous ovarian carcinomas, intra-tumoral expression of SMA and PD-L1 emerged as strong prognostic indicators. Proximity of CD8 + T-cells to tumor cells as measured by group degree centrality was a marker of improved prognosis and of infiltration of all T cell subtypes, dendritic cells, and tumor-associated macrophages, along with elevated expression of PD-L1, IDO1, Tim-3, and CD40. In contrast, tumors with low CD8-tumor proximity were enriched in CD20 and CD25.

Our findings highlight the potential for differential targeted treatment related to histotyping, tumor-immune spatial scoring and intra-tumoral expression of key prognostic markers.

The online version contains supplementary material available at 10.1186/s12967-026-07879-8.

## Linked entities

- **Genes:** STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061], CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493], CD274 (CD274 molecule) [NCBI Gene 29126], CD40 (CD40 molecule) [NCBI Gene 958], IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620], VSIR (V-set immunoregulatory receptor) [NCBI Gene 64115], CD276 (CD276 molecule) [NCBI Gene 80381], SMN1 (survival of motor neuron 1, telomeric) [NCBI Gene 6606], CD274 (CD274 molecule) [NCBI Gene 29126], IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620], HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868], CD40 (CD40 molecule) [NCBI Gene 958]
- **Diseases:** ovarian cancer (MONDO:0005140), mucinous ovarian cancer (MONDO:0024282), clear cell ovarian cancer (MONDO:0021144), endometrioid ovarian cancer (MONDO:0006335)

## Full-text entities

- **Genes:** SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, HLA-G (major histocompatibility complex, class I, G) [NCBI Gene 3135] {aka MHC-G}, GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932], PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, RAF1 (Raf-1 proto-oncogene, serine/threonine kinase) [NCBI Gene 5894] {aka CMD1NN, CRAF, NS5, Raf-1, c-Raf}, ICOS (inducible T cell costimulator) [NCBI Gene 29851] {aka AILIM, CD278, CVID1}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, IL7R (interleukin 7 receptor) [NCBI Gene 3575] {aka CD127, CDW127, IL-7R-alpha, IL-7Ralpha, IL7RA, IL7Ralpha}, BCL2L11 (BCL2 like 11) [NCBI Gene 10018] {aka BAM, BIM, BOD}, ISG20 (interferon stimulated exonuclease gene 20) [NCBI Gene 3669] {aka CD25, HEM45}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, BCL2L1 (BCL2 like 1) [NCBI Gene 598] {aka BCL-XL/S, BCL2L, BCLX, Bcl-X, PPP1R52}, NF1 (neurofibromin 1) [NCBI Gene 4763] {aka NFNS, VRNF, WSS}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, BCL6 (BCL6 transcription repressor) [NCBI Gene 604] {aka BCL5, BCL6A, LAZ3, ZBTB27, ZNF51}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, INPP4B (inositol polyphosphate-4-phosphatase type II B) [NCBI Gene 8821], CD14 (CD14 molecule) [NCBI Gene 929], LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, FAS (Fas cell surface death receptor) [NCBI Gene 355] {aka ALPS1A, APO-1, APT1, CD95, FAS1, FASTM}, GZMA (granzyme A) [NCBI Gene 3001] {aka CTLA3, HFSP}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CEACAM8 (CEA cell adhesion molecule 8) [NCBI Gene 1088] {aka CD66b, CD67, CGM6, NCA-95}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, CASP9 (caspase 9) [NCBI Gene 842] {aka APAF-3, APAF3, ICE-LAP6, MCH6, PPP1R56}, ARG1 (arginase 1) [NCBI Gene 383], PLCG1 (phospholipase C gamma 1) [NCBI Gene 5335] {aka IDAA, NCKAP3, PLC-II, PLC1, PLC148, PLCgamma1}, FAP (fibroblast activation protein alpha) [NCBI Gene 2191] {aka DPPIV, FAPA, FAPalpha, SIMP}, TNFRSF9 (TNF receptor superfamily member 9) [NCBI Gene 3604] {aka 4-1BB, CD137, CDw137, ILA, IMD109}, CD80 (CD80 molecule) [NCBI Gene 941] {aka B7, B7-1, B7.1, BB1, CD28LG, CD28LG1}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, AKT1S1 (AKT1 substrate 1) [NCBI Gene 84335] {aka Lobe, PRAS40}, SLC25A16 (solute carrier family 25 member 16) [NCBI Gene 8034] {aka D10S105E, GDA, GDC, HGT.1, ML7, hGP}, mucin [NCBI Gene 100508689], CD34 (CD34 molecule) [NCBI Gene 947], SMN1 (survival of motor neuron 1, telomeric) [NCBI Gene 6606] {aka BCD541, GEMIN1, SMA, SMA1, SMA2, SMA3}, ARID1A (AT-rich interaction domain 1A) [NCBI Gene 8289] {aka B120, BAF250, BAF250a, BM029, C1orf4, CSS2}, TNFRSF18 (TNF receptor superfamily member 18) [NCBI Gene 8784] {aka AITR, CD357, ENERGEN, GITR, GITR-D}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, MAP2K1 (mitogen-activated protein kinase kinase 1) [NCBI Gene 5604] {aka CFC3, MAPKK1, MEK1, MEL, MKK1, PRKMK1}, KRT20 (keratin 20) [NCBI Gene 54474] {aka CD20, CK-20, CK20, K20, KRT21}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}
- **Diseases:** low-grade serous (MESH:D008228), Clear cell OC (MESH:D010051), ovarian endometriosis (MESH:D010049), BRCA variant (MESH:D001941), DSP (MESH:D008569), clear cell (MESH:D002292), TMA (MESH:D017695), metastases (MESH:D009362), mucinous (MESH:D002288), teratoma (MESH:D013724), coxme (MESH:D030401), cytotoxic (MESH:D064420), Type II (MESH:D006938), I (MESH:D006969), tumorigenesis (MESH:D063646), homologous recombination deficiency (MESH:C535296), Type I/II tumors (MESH:D056829), fibrosis (MESH:D005355), endometriosis (MESH:D004715), tubal precursor lesions (MESH:D005184), Endometrioid (MESH:D018269), Cancer (MESH:D009369), serous (MESH:D018297)
- **Chemicals:** Formalin (MESH:D005557), DAPI (MESH:C007293), 1xTBS (-), Alexa Fluor 647 (MESH:C569686), Hematoxylin (MESH:D006416), Syto13 (MESH:C461159), water (MESH:D014867), TBS (MESH:D013725), EtOH (MESH:D000431), platinum (MESH:D010984), paraffin (MESH:D010232), DEPC (MESH:D004047)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** OTI3H6 — Mus musculus (Mouse), Hybridoma (CVCL_A8JL), Syto13 — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_1081), MOC — Homo sapiens (Human), Ovarian mucinous adenocarcinoma, Cancer cell line (CVCL_RN35)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12973683/full.md

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Source: https://tomesphere.com/paper/PMC12973683