# The Lsm1–7 complex couples 3′-end protection to histone H4 acetylation to maintain mRNA homeostasis in Fusarium graminearum

**Authors:** Yiyi Ren, Jiayue Yan, Xingmin Han, Chenghui Xu, Meiling Guo, Xuan Wang, Chao Liu, Antonio F Logrieco, Yongfeng Jin, Zhonghua Ma, Yun Chen

PMC · DOI: 10.1093/nar/gkag169 · 2026-03-10

## TL;DR

This study reveals how the Lsm1–7 complex in the fungus Fusarium graminearum helps maintain mRNA balance by protecting RNA ends and influencing gene expression.

## Contribution

The study identifies a new regulatory mechanism involving Lsm1–7 and chromatin modifications to maintain mRNA homeostasis in fungal pathogens.

## Key findings

- Lsm1–7 localizes to P-bodies and is essential for fungal growth, virulence, and mycotoxin production.
- Lsm1–7 protects U/A-rich 3′ ends of transcripts and inhibits their decay via two parallel pathways.
- Loss of Lsm1–7 triggers a compensatory transcriptional response involving histone H4 acetylation.

## Abstract

Eukaryotic messenger RNA (mRNA) homeostasis requires precise coordination between synthesis and decay, yet the mechanisms governing this balance in fungal pathogens remain elusive. Here we provide a comprehensive characterization of the Lsm1–7 complex in the cereal pathogen Fusarium graminearum. We show that Lsm1–7 assembles into a conserved hetero-heptameric module that localizes to processing bodies (P-bodies) and is required for fungal growth, virulence, and mycotoxin biosynthesis. Mechanistically, Lsm1–7/Pat1 binds U/A-rich 3′ termini of a defined set of transcripts enriched for central metabolism and restrains their 3′–5′ decay. Genetic suppressor analyses and mechanistic dissection identify two parallel decay routes antagonized by Lsm1–7, including the exosome recruited by the uridyltransferase Cid1 and the Ski–exosome complex mediated by the newly identified scaffold protein Lsp1. Moreover, loss of Lsm1–7 elicits a compensatory transcriptional response involving the Rpd3L (Sin3) histone deacetylase complex, in which elevated histone H4 acetylation at affected loci partially restores transcript output. Together, our results define an integrated cytoplasmic–nuclear regulatory axis in F. graminearum that couples 3′-end protection to chromatin-based transcriptional buffering to maintain mRNA homeostasis. While Lsp1 appears lineage-adapted, the underlying logic may reflect a broader principle of gene-expression buffering that supports fungal fitness and pathogenicity.

Graphical Abstract

## Linked entities

- **Genes:** APPBP2 (amyloid beta precursor protein binding protein 2) [NCBI Gene 10513], cid-1 (4Fe-4S ferredoxin-type domain-containing protein) [NCBI Gene 175707], LSP1 (lymphocyte specific protein 1) [NCBI Gene 4046], HDAC1 (histone deacetylase 1) [NCBI Gene 121860492], sin-3 (Paired amphipathic helix protein sin-3) [NCBI Gene 172628]
- **Proteins:** APPBP2 (amyloid beta precursor protein binding protein 2), cid-1 (4Fe-4S ferredoxin-type domain-containing protein), LSP1 (lymphocyte specific protein 1)
- **Species:** Fusarium graminearum (taxon 5518)

## Full-text entities

- **Genes:** GLC7 (type 1 serine/threonine-protein phosphatase catalytic subunit GLC7) [NCBI Gene 856870] {aka CID1, DIS2}, PUF3 (mRNA-binding protein PUF3) [NCBI Gene 850647], LSM7 (Sm-like protein LSM7) [NCBI Gene 855575], SCD6 (Scd6p) [NCBI Gene 856247] {aka LSM13}, PAT1 (deadenylation-dependent mRNA-decapping factor PAT1) [NCBI Gene 850440] {aka MRT1}, GAL4 (galactose-responsive transcription factor GAL4) [NCBI Gene 855828] {aka GAL81}, UPF3 (Upf3p) [NCBI Gene 852963] {aka SUA6, SUP112}, DHH1 (DExD/H-box ATP-dependent RNA helicase DHH1) [NCBI Gene 851394], LSP1 (lipid-binding protein LSP1) [NCBI Gene 856103], NMD2 (Nmd2p) [NCBI Gene 856476] {aka IFS1, SUA1, SUP111, UPF2}, LSM6 (U4/U6-U5 snRNP complex subunit LSM6) [NCBI Gene 851984], TRI1 (Tri1p) [NCBI Gene 855273], ACT1 (actin) [NCBI Gene 850504] {aka ABY1, END7}, LSM3 (U4/U6-U5 snRNP complex subunit LSM3) [NCBI Gene 851159] {aka SMX4, USS2}, MPT5 (Mpt5p) [NCBI Gene 852697] {aka HTR1, PUF5, UTH4}, XRN1 (chromatin-binding exonuclease XRN1) [NCBI Gene 852702] {aka DST2, KEM1, RAR5, SEP1, SKI1}, SIN3 (transcriptional regulator SIN3) [NCBI Gene 854158] {aka CPE1, GAM2, RPD1, SDI1, SDS16, UME4}, SKI2 (SKI complex RNA helicase subunit SKI2) [NCBI Gene 851114], LSM1 (Lsm1p) [NCBI Gene 853318] {aka SPB8}, FGSG_02781 [NCBI Gene 23550139], LSM2 (Sm-like protein LSM2) [NCBI Gene 852255] {aka SMX5, SNP3}, HHO1 (histone H1) [NCBI Gene 855976], FGSG_09048 [NCBI Gene 23556014], FGSG_01632 [NCBI Gene 23549062], ACTIN [NCBI Gene 23554418]
- **Diseases:** Fungal (MESH:D009181), WT (MESH:D006969), tumorigenesis (MESH:D063646), tumor (MESH:D009369), TBI (MESH:D000070642), nitrogen (MESH:D007222)
- **Chemicals:** SDS (MESH:D012967), Trp (MESH:D014364), KCl (MESH:D011189), biotin (MESH:D001710), Poly(A) (MESH:D011061), glucose (MESH:D005947), 4',6-diamidino-2-phenylindole (MESH:C007293), DMSO (MESH:D004121), PAP (MESH:D010724), hygromycin B (MESH:D006921), NaNO3 (MESH:C031618), CM (MESH:D003476), Leu (MESH:D007930), ATP (MESH:D000255), agarose (MESH:D012685), TBS (MESH:D013725), Trichothecene (MESH:C000630165), sucrose (MESH:D013395), U (MESH:D014501), PEG (MESH:D011092), His (MESH:D006639), amino acid (MESH:D000596), Ade (MESH:C060154), beta-estradiol (MESH:D004958), lithium acetate (MESH:C488804), carbon (MESH:D002244), Poly(A)U (MESH:D011063), TCA (MESH:D014238), casamino acids (MESH:C017721), agar (MESH:D000362), Thiolutin (MESH:C006361), NaCl (MESH:D012965), DON (MESH:C007262), 25A (-), paraffin (MESH:D010232), zeocin (MESH:C105427), oligoU (MESH:C027916), geneticin (MESH:C010680)
- **Species:** Triticum aestivum (bread wheat, species) [taxon 4565], Mus musculus (house mouse, species) [taxon 10090], Escherichia coli DH5[alpha] (strain) [taxon 668369], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Fusarium graminearum PH-1 (strain) [taxon 229533], Fusarium graminearum (species) [taxon 5518], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]
- **Mutations:** G2709A, Leu/Trp, G903N
- **Cell lines:** EM1101 — Homo sapiens (Human), Finite cell line (CVCL_0P87), PH-1 — Podocnemis unifilis (Yellow-spotted Amazon river turtle), Spontaneously immortalized cell line (CVCL_UA29), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12972913/full.md

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Source: https://tomesphere.com/paper/PMC12972913