# La protein binding to telomerase RNA supports an evolutionary relationship between plant and ciliate telomerase pathways

**Authors:** Leon Jenner, Dzmitry Pruchkouski, Barbora Štefanovie, Olga Nováková, Monika Kubíčková, Petr Fajkus, Marie Brázdová, Jan Paleček, Eva Sýkorová

PMC · DOI: 10.1093/nar/gkag216 · 2026-03-10

## TL;DR

This study shows that the AtLa1 protein in plants interacts with telomerase RNA in a way similar to a protein in ciliates, suggesting a shared evolutionary pathway for RNA biogenesis.

## Contribution

The study reveals a conserved evolutionary relationship between plant and ciliate telomerase RNA biogenesis pathways through the function of La family proteins.

## Key findings

- AtLa1 binds to telomerase RNA similarly to the ciliate LARP7 protein p65.
- The DUF3223 domain in the Domino protein binds RNA with modest telomerase RNA affinity.
- RNA biogenesis pathways in plants and ciliates may share a conserved evolutionary origin.

## Abstract

The Arabidopsis thaliana La1 (AtLa1) protein is a member of the genuine La family of RNA biogenesis proteins, which are structurally similar to the La-related protein 7 (LARP7) family. LARP7 proteins participate in the biogenesis of the telomerase ribonucleoprotein complex in model systems, but are absent in plants. We show that AtLa1 binds to telomerase RNA in a manner reminiscent of the Tetrahymena LARP7 protein p65. Classical in vitro methods and microscale thermophoresis (MST) were used to specify the molecular structures involved in this multi-surface interaction. AtLa1 also enhances the binding of TR to the telomerase reverse transcriptase RNA binding domain. We therefore propose that biogenesis of telomerase RNA in plants and ciliates is achieved by a similar pathway, differing in the employment of genuine La or LARP7-like proteins, respectively. We also report that the domain of unknown function (DUF3223, DeCL) found in the AtLa1 protein binding partner, Domino, is an RNA binding domain with modest TR-binding capacity. This domain is also found in plant and ciliate proteins, including plant polymerases IV/V and the Tetrahymena La protein Mlp1. Together, these suggest that RNA biogenesis pathways in plants and ciliates have a conserved evolutionary relationship, with parallels between their La proteins.

Graphical Abstract

## Linked entities

- **Proteins:** La1 (La protein 1), LARP7 (La ribonucleoprotein 7, transcriptional regulator), RELA (RELA proto-oncogene, NF-kB subunit), dom (domino), ABCC6 (ATP binding cassette subfamily C member 6)
- **Species:** Arabidopsis thaliana (taxon 3702), Tetrahymena (taxon 5890)

## Full-text entities

- **Genes:** MARCKSL1 (MARCKS like 1) [NCBI Gene 65108] {aka F52, MACMARCKS, MLP, MLP1, MRP}, H2AC20 (H2A clustered histone 20) [NCBI Gene 8338] {aka H2A, H2A-GL101, H2A/q, H2AFQ, HIST2H2AC}, TERT (telomerase reverse transcriptase) [NCBI Gene 831548] {aka ATTERT, F5E19.190, F5E19_190, telomerase reverse transcriptase}, MRP1 (mitochondrial 37S ribosomal protein mS43 MRP1) [NCBI Gene 851948] {aka mS43}, FLT3LG (fms related receptor tyrosine kinase 3 ligand) [NCBI Gene 2323] {aka FL, FLG3L, FLT3L, IMD125}, GAL4 (galactose-responsive transcription factor GAL4) [NCBI Gene 855828] {aka GAL81}, ATR (ATR checkpoint kinase) [NCBI Gene 545] {aka FCTCS, FRP1, MEC1, SCKL, SCKL1}, HIS3 (imidazoleglycerol-phosphate dehydratase HIS3) [NCBI Gene 854377] {aka HIS10, HIS8}, CBF5 (pseudouridine synthase CBF5) [NCBI Gene 850872], NAP57 (homologue of NAP57) [NCBI Gene 824882] {aka AtCBF5, AtNAP57, CBF5, homologue of NAP57}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, H2BC21 (H2B clustered histone 21) [NCBI Gene 8349] {aka GL105, H2B, H2B-GL105, H2B.1, H2BE, H2BFQ}, AIMP1 (aminoacyl tRNA synthetase complex interacting multifunctional protein 1) [NCBI Gene 9255] {aka EMAP2, EMAPII, HLD3, SCYE1, p43}, SSB (small RNA binding exonuclease protection factor La) [NCBI Gene 6741] {aka LARP3, La, La/SSB, SSB/La}, ENT1 (equilibrative nucleotide transporter 1) [NCBI Gene 843369] {aka AT, equilibrative nucleotide transporter 1}, TTR (transthyretin) [NCBI Gene 7276] {aka AMYLD1, ATTR, CTS, CTS1, HEL111, HsT2651}, F2R (coagulation factor II thrombin receptor) [NCBI Gene 2149] {aka CF2R, HTR, PAR-1, PAR1, TR}, FLNB (filamin B) [NCBI Gene 2317] {aka ABP-278, ABP-280, FH1, FLN-B, FLN1L, LRS1}, LARP1 (La ribonucleoprotein 1, translational regulator) [NCBI Gene 23367] {aka LARP, Lar1, Lhp1}, La1 (La protein 1) [NCBI Gene 829408] {aka AtLa1, F4D11.80, F4D11_80, La protein 1}, MDM4 (MDM4 regulator of p53) [NCBI Gene 4194] {aka BMFS6, HDMX, MDMX, MRP1}, LARP7 (La ribonucleoprotein 7, transcriptional regulator) [NCBI Gene 51574] {aka ALAZS, HDCMA18P, PIP7S, hLARP7}, TRNG (tRNA-Gly) [NCBI Gene 4563] {aka MTTG}, La2 (RNA recognition motif (RRM)-containing protein) [NCBI Gene 844327] {aka AtLa2, F19K16.16, F19K16_16, La protein 2}, TERT (telomerase reverse transcriptase) [NCBI Gene 7015] {aka CMM9, DKCA2, DKCB4, EST2, PFBMFT1, TCS1}, DKC1 (dyskerin pseudouridine synthase 1) [NCBI Gene 1736] {aka CBF5, CHINE1, DKC, DKCX, NAP57, NOLA4}, EXOSC10 (exosome component 10) [NCBI Gene 5394] {aka PM-Scl, PM/Scl-100, PMSCL, PMSCL2, RRP6, Rrp6p}
- **Diseases:** hypoxia (MESH:D000860), defective chloroplasts and (MESH:D000013), RRM (MESH:D012327)
- **Chemicals:** adenine (MESH:D000225), -Trp (MESH:D014364), SDS (MESH:D012967), isopropanol (MESH:D019840), HCl (MESH:D006851), 32P (MESH:C000615311), KCl (MESH:D011189), biotin (MESH:D001710), DTT (MESH:D004229), Tween (MESH:D011136), oligonucleotide (MESH:D009841), CY5 (MESH:C085321), glutathione (MESH:D005978), leucine (MESH:D007930), maleimide (MESH:C043592), cytosine (MESH:D003596), aminotriazole (MESH:D000640), LA (MESH:D007811), water (MESH:D014867), Imidazole (MESH:C029899), Na2CO3 (MESH:C005686), poly-U (MESH:D011072), agarose (MESH:D012685), chloroform (MESH:D002725), phospho-citrate (MESH:C014148), EDTA (MESH:D004492), histidine (MESH:D006639), amino acids (MESH:D000596), MgSO4 (MESH:D008278), uracil (MESH:D014498), tetramethylbenzidine (MESH:C021758), Triton X-100 (MESH:D017830), -His (MESH:C033223), T (MESH:D014316), S (MESH:D013455), NaCl (MESH:D012965), potassium acetate (MESH:D019347), Cy5-maleimide (-), H2O2 (MESH:D006861), glycerol (MESH:D005990), phosphate (MESH:D010710)
- **Species:** Lathyrus oleraceus (garden pea, species) [taxon 3888], Alveolata (alveolates, clade) [taxon 33630], Cyperus elegans (species) [taxon 1077491], Allium cepa (onion, species) [taxon 4679], Tetrahymena thermophila (species) [taxon 5911], Cestrum elegans (species) [taxon 103475], Asparagus officinalis (garden asparagus, species) [taxon 4686], Scilla peruviana (Cuban lily, species) [taxon 65771], Mus musculus (house mouse, species) [taxon 10090], Solanales (order) [taxon 4069], Zea mays (maize, species) [taxon 4577], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Solanum lycopersicum (tomato, species) [taxon 4081], Powellomyces sp. EA (species) [taxon 252690], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Trypanosoma brucei (species) [taxon 5691], Nicotiana sylvestris (wood tobacco, species) [taxon 4096], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]
- **Mutations:** E2050S, 20-01331X to E, R344, D333, C-25 C, F530L, E2621S, D333R, R344A, F331, W387A, His at 4, R to A, F331A, M13F
- **Cell lines:** Rosetta (DE3) — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), BL21-CodonPlus-RIL — Mus musculus (Mouse), Hepatocellular carcinoma of the mouse, Cancer cell line (CVCL_B7TK), tsnoR43.1 — Mus musculus (Mouse), Hybridoma (CVCL_B5AI), YBZ-1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12972900/full.md

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Source: https://tomesphere.com/paper/PMC12972900