# Earthworm gut microbiome promotes biodegradation of albendazole in soil

**Authors:** Jiao Wang, Hongnuo Ge, Yinuo Liu, Chenyu Huang, Luqing Zhang, Yunlong Yu, Lihui Xu, Hua Fang

PMC · DOI: 10.1007/s44297-026-00068-5 · Crop Health · 2026-03-09

## TL;DR

Earthworms' gut microbes help break down the drug albendazole in soil, with specific bacteria and genes playing key roles in the process.

## Contribution

Identified specific earthworm gut microbes and genes involved in albendazole biodegradation, and the role of zinc oxide nanoparticles in reducing drug accumulation.

## Key findings

- Albendazole enrichment increased specific degradation genes (hmr, ami) and activated sulfur reduction and hydroxylation pathways.
- Bacteria like Sphaerobacter and Nocardia were identified as potential hosts for biodegradation genes in earthworm guts.
- Zinc oxide nanoparticles reduced albendazole bioaccumulation in earthworms and accelerated its dissipation in soil.

## Abstract

The excretion of the anthelmintic drug albendazole (ALB) from treated animals into the soil, as well as its widespread application as a fungicide, poses a serious ecological risk to the soil environment. In this study, we investigated the degradation of ALB in soil and its bioaccumulation in earthworms, changes in the microbiome and degradation genes, and the effect of zinc oxide nanoparticles on the degradation and enrichment behaviors of ALB and microbial community structure and function. Our findings showed that ALB selectively enriched specific albendazole degradation genes (i.e., hmr and ami) in the earthworm, preferentially activating the pathways associated with sulfur reduction, amination of ALB sulfone, and hydroxylation of ALB. Metagenomic analysis revealed that the relative abundances of ppo, xylA, cutC, and nfsl in the earthworm gut were 0.19–52.64-fold higher in the ALB treatment than in the control, indicating their potential dominance in ALB biodegradation. Network analysis further identified potential bacterial hosts carrying biodegradation genes and albendazole degradation genes. Notably, Sphaerobacter, Saccharothrix, Actinomadura, and Nocardia were recognized as potential dual hosts of biodegradation genes and albendazole degradation genes, displaying a 0.05–1.32-fold elevation in relative abundance in ALB-treated earthworm guts compared to the control. Additionally, ZnO nanoparticles were found to reduce ALB bioaccumulation in earthworms and accelerate its dissipation in soil. These findings provide novel insights into the bioremediation mechanisms of pesticides in soil-earthworm ecosystems.

The online version contains supplementary material available at 10.1007/s44297-026-00068-5.

## Linked entities

- **Genes:** NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164], ami (anosmic) [NCBI Gene 43908], PPOX (protoporphyrinogen oxidase) [NCBI Gene 5498], xylA (D-xylose isomerase) [NCBI Gene 915615], CUTC (cutC copper transporter) [NCBI Gene 51076]
- **Chemicals:** albendazole (PubChem CID 2082)
- **Species:** Sphaerobacter (taxon 2056), Saccharothrix (taxon 2071), Actinomadura (taxon 1988), Nocardia (taxon 1817)

## Full-text entities

- **Genes:** CUTC (cutC copper transporter) [NCBI Gene 51076] {aka CGI-32}, ALKBH1 (alkB homolog 1, histone H2A dioxygenase) [NCBI Gene 8846] {aka ABH, ABH1, ALKBH, alkB, hABH}, CYP2B6 (cytochrome P450 family 2 subfamily B member 6) [NCBI Gene 1555] {aka CPB6, CYP2B, CYP2B7, CYPIIB6, EFVM, IIB1}, NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164] {aka GFRP1, HMR, N10, NAK-1, NGFIB, NP10}, SMG1 (SMG1 nonsense mediated mRNA decay associated PI3K related kinase) [NCBI Gene 23049] {aka 61E3.4, ATX, LIP}, PPOX (protoporphyrinogen oxidase) [NCBI Gene 5498] {aka PPO, V290M, VP, VPCO}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, PSAT1 (phosphoserine aminotransferase 1) [NCBI Gene 29968] {aka EPIP, NLS2, PSA, PSAT, PSATD}
- **Diseases:** soil-transmitted helminthiases (MESH:D006373), CK (OMIM:300831), parasitic infections (MESH:D010272), ADG (MESH:D055959), toxicity (MESH:D064420), RSDs (MESH:D010262), helminthic infections (MESH:D007239), BDGs (MESH:C537680), MGEs (MESH:D014086), cystic echinococcosis (MESH:D004443)
- **Chemicals:** ethanol (MESH:D000431), benzimidazole (MESH:C031000), water (MESH:D014867), Zinc oxide (MESH:D015034), E (MESH:D004540), octanol (MESH:D000442), ALB (MESH:D015766), amine (MESH:D000588), ALB sulfone (MESH:C027187), acetonitrile (MESH:C032159), aromatic hydrocarbon (MESH:D006841), acetone (MESH:D000096), Na2SO4 (MESH:C012036), phosphate (MESH:D010710), ivermectin (MESH:D007559), ADG (-), NaCl (MESH:D012965), sulfur (MESH:D013455), albendazole sulfoxide (MESH:C027186)
- **Species:** Agromyces (genus) [taxon 33877], gut metagenome (species) [taxon 749906], Microbacterium (genus) [taxon 33882], Bradyrhizobium sp. DG (species) [taxon 862692], Methylorubrum (genus) [taxon 2282523], Micromonospora (genus) [taxon 1873], Pseudomonas (RNA similarity group I, genus) [taxon 286], Metaphire sieboldi (earthworm, species) [taxon 506672], Bradyrhizobium (genus) [taxon 374], Brucella (genus) [taxon 234], earthworms (species) [taxon 71170], Microvirga (genus) [taxon 186650], Methylocystis (genus) [taxon 133], Homo sapiens (human, species) [taxon 9606], Methylobacterium (genus) [taxon 407], Eisenia fetida (brandling worm, species) [taxon 6396], Cohaesibacter (genus) [taxon 655352], Chelatococcus (genus) [taxon 28209]

## Full text

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## Figures

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## References

3 references — full list in the complete paper: https://tomesphere.com/paper/PMC12972218/full.md

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Source: https://tomesphere.com/paper/PMC12972218