# Myc and Skp2 overexpression promotes p27 ubiquitination and degradation in Ewing Sarcoma

**Authors:** Yuta Kubota, Masanori Kawano, Ichiro Itonaga, Nobuhiro Kaku, Kazuhiro Tanaka

PMC · DOI: 10.1371/journal.pone.0342767 · PLOS One · 2026-03-09

## TL;DR

This study shows that Myc and Skp2 proteins drive Ewing Sarcoma growth by speeding up cell division and breaking down a tumor-suppressing protein called p27.

## Contribution

The paper reveals a novel mechanism where Myc and Skp2 promote Ewing Sarcoma progression through p27 ubiquitination and CCNE/CDK2 complex activation.

## Key findings

- Myc and Skp2 overexpression correlates with reduced p27 levels and increased cell proliferation in Ewing Sarcoma.
- Knockdown of Myc and Skp2 leads to G1 cell cycle arrest and reduced tumor growth in mouse models.
- The CCNE/CDK2 complex activates Rb phosphorylation and p27 degradation via Skp2-mediated ubiquitination.

## Abstract

Ewing sarcoma remains partially uncontrollable even after treatment with chemotherapy, surgery, and radiation therapy due to its high malignancy. To explore genes that drive Ewing sarcoma cell proliferation, we conducted a comprehensive analysis of mRNA expression. Based on cDNA array results, we identified consistently elevated expression of Myc and S-phase kinase-associated protein 2 (Skp2) across all five Ewing sarcoma cell lines examined.

The functional roles of Myc and Skp2 were assessed by siRNA-mediated knockdown and overexpression assays, followed by cell proliferation, cell cycle, and protein expression analyses. Ubiquitination of p27 and activation of the CCNE/CDK2 complex were evaluated by immunoprecipitation and western blotting. Finally, the in vivo relevance of Myc and Skp2 knockdown was validated using a xenograft mouse model.

Knockdown (KD) using siRNAs specific for Myc and Skp2 resulted in reduced cell growth and an increased proportion of cells in the G0/G1 phase, indicating G1 arrest. In KD cells, we observed decreased CDK2 activity, increased p27 expression, and reduced expression of cyclin E (CCNE). The increased activity of the CCNE/CDK2 complex led to enhanced phosphorylation of p27 at Thr187, accelerating p27 degradation via Skp2-mediated ubiquitination. Concurrently, the CCNE/CDK2 complex promoted phosphorylation of Rb at Ser807/808, which is involved in E2F1 activation.

This mechanism was identified through a comprehensive expression analysis aimed at uncovering the drivers of cell cycle acceleration in Ewing sarcoma. The findings offer new insights into therapeutic strategies for this malignancy, which has seen little progress in treatment over several decades. This discovery holds the potential to transform the current landscape, as no effective molecularly targeted therapies have yet been developed.

## Linked entities

- **Genes:** MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609], SKP2 (S-phase kinase associated protein 2) [NCBI Gene 6502], IFI27 (interferon alpha inducible protein 27) [NCBI Gene 3429], CCNE1 (cyclin E1) [NCBI Gene 898], CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017], RB1 (RB transcriptional corepressor 1) [NCBI Gene 5925], E2F1 (E2F transcription factor 1) [NCBI Gene 1869]
- **Proteins:** MYC (MYC proto-oncogene, bHLH transcription factor), SKP2 (S-phase kinase associated protein 2), IFI27 (interferon alpha inducible protein 27), CCNE1 (cyclin E1), CDK2 (cyclin dependent kinase 2), RB1 (RB transcriptional corepressor 1)
- **Diseases:** Ewing Sarcoma (MONDO:0012817)

## Full-text entities

- **Genes:** Cdk2 (cyclin dependent kinase 2) [NCBI Gene 12566] {aka A630093N05Rik}, Dner (delta/notch-like EGF repeat containing) [NCBI Gene 227325] {aka A930026D19Rik, BET, Bret}, DCTN6 (dynactin subunit 6) [NCBI Gene 10671] {aka WS-3, WS3, p27}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, TFAP4 (transcription factor AP-4) [NCBI Gene 7023] {aka AP-4, bHLHc41}, Rb1 (RB transcriptional corepressor 1) [NCBI Gene 19645] {aka Rb, Rb-1, p110-RB1, pRb, pp105}, Rnf123 (ring finger protein 123) [NCBI Gene 84585] {aka Kpc1}, CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026] {aka CAP20, CDKN1, CIP1, MDA-6, P21, SDI1}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, Ccna2 (cyclin A2) [NCBI Gene 12428] {aka Ccn-1, Ccn1, Ccna, CycA2, Cyca}, E2f1 (E2F transcription factor 1) [NCBI Gene 13555] {aka E2F-1, Tg(Wnt1-cre)2Sor, mKIAA4009}, CCNE1 (cyclin E1) [NCBI Gene 898] {aka CCNE, pCCNE1}, Cdkn1b (cyclin dependent kinase inhibitor 1B) [NCBI Gene 12576] {aka Kip1, p27, p27Kip1}, Cul1 (cullin 1) [NCBI Gene 26965] {aka Cul-1}, Tfap4 (transcription factor AP4) [NCBI Gene 83383] {aka AP-4, D930048N17Rik, Tcfap4, bHLHc41}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, Tgfbr2 (transforming growth factor, beta receptor II) [NCBI Gene 21813] {aka 1110020H15Rik, DNIIR, RIIDN, TBR-II, TbetaR-II, TbetaRII}, E2F1 (E2F transcription factor 1) [NCBI Gene 1869] {aka E2F-1, RBAP1, RBBP3, RBP3}, Cks1b (CDC28 protein kinase 1b) [NCBI Gene 54124] {aka 2410005G18Rik, 2610005D03Rik, Cks1, sid1334}, Cort (cortistatin) [NCBI Gene 12854] {aka CST, PCST}, Kitl (kit ligand) [NCBI Gene 17311] {aka Clo, Con, Gb, Kitlg, Mgf, SCF}, Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}, Mul1 (mitochondrial ubiquitin ligase activator of NFKB 1) [NCBI Gene 68350] {aka 0610009K11Rik, Gide, Tnrip-1}, SKP2 (S-phase kinase associated protein 2) [NCBI Gene 6502] {aka FBL1, FBXL1, FLB1, p45}, Skp1 (S-phase kinase-associated protein 1) [NCBI Gene 21402] {aka 15kDa, 2610043E24Rik, 2610206H23Rik, EMC19, OCP-II, OCP2}, Skp2 (S-phase kinase-associated protein 2) [NCBI Gene 27401] {aka 4930500A04Rik, FBXL1, FWD1, p45}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, Lmnb1 (lamin B1) [NCBI Gene 16906]
- **Diseases:** Tumor (MESH:D009369), bone tumor (MESH:D001859), prostate cancer (MESH:D011471), oral squamous cell carcinoma (MESH:D000077195), Ewing Sarcoma (MESH:D012512), dislocation (MESH:D004204), breast cancer (MESH:D001943)
- **Chemicals:** BrdU (MESH:D001973), paraffin (MESH:D010232), SDS (MESH:D012967), water (MESH:D014867), Lipofectamine  2000 (MESH:C086724), hematoxylin (MESH:D006416), JQ1 (-), 4-OHT (MESH:C032278), PBS (MESH:D007854), DAB (MESH:C000469), citrate (MESH:D019343), SYBR Green (MESH:C098022)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** SCCH — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_1686), SKNMC — Homo sapiens (Human), Askin tumor, Cancer cell line (CVCL_0530), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), SKES-1 — Homo sapiens (Human), Ewing sarcoma, Cancer cell line (CVCL_0627), RDES — Homo sapiens (Human), Ewing sarcoma, Cancer cell line (CVCL_2169)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12970872/full.md

## References

38 references — full list in the complete paper: https://tomesphere.com/paper/PMC12970872/full.md

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Source: https://tomesphere.com/paper/PMC12970872