# Export of miRNAs from activated macrophages is cooperative and HuR‐dependent

**Authors:** Syamantak Ghosh, Kamalika Mukherjee, Suvendra N. Bhattacharyya

PMC · DOI: 10.1002/1873-3468.70309 · Febs Letters · 2026-02-20

## TL;DR

The study reveals that activated macrophages export miRNAs in a cooperative way, facilitated by the protein HuR, which helps regulate gene repression and inflammation.

## Contribution

The study identifies HuR as a key driver of cooperative miRNA export in macrophages, enabling coordinated release of miRNAs.

## Key findings

- Activated macrophages export miRNAs cooperatively, with miR-122 enhancing the export of miR-146a and others.
- HuR binds to miRNAs and promotes their entry into endosomes, facilitating cooperative export.
- Cooperative miRNA export leads to synchronized expression of pro-inflammatory genes in macrophages.

## Abstract

MiRNA export is a tightly regulated process crucial for maintaining balanced miRNA and target gene expression levels in metazoan cells. RNA‐interacting proteins such as HuR play a key role in the selectivity and specificity of miRNA export, thereby enabling context‐dependent release of gene‐repressing miRNAs from mammalian cells. Our results demonstrate that activated macrophages cooperatively export miRNAs, where hepatic miR‐122 significantly enhances the export of miR‐146a and other miRNAs. We also observe that this cooperative export causes a synchronized increase in the expression of pro‐inflammatory target genes in activated macrophages. In investigating the molecular mechanisms, we found that the miRNA‐binding protein HuR cooperatively binds to miRNAs and promotes their entry into endosomes, thereby facilitating their cooperative export. This highlights the selective and cooperative nature of endosome targeting happening in activated macrophages as a prerequisite for extracellular vesicle‐mediated miRNA export.

Impact statementThis study uncovers a new mechanism for miRNA export regulation in mammalian cells, driven by the RNA‐binding protein HuR. In macrophages, HuR cooperatively binds with miRNAs to export both low‐ and high‐affinity substrates, thereby influencing macrophage activation. This cooperative export method is a common strategy for coordinated miRNA release across different cells.

This study uncovers a new mechanism for miRNA export regulation in mammalian cells, driven by the RNA‐binding protein HuR. In macrophages, HuR cooperatively binds with miRNAs to export both low‐ and high‐affinity substrates, thereby influencing macrophage activation. This cooperative export method is a common strategy for coordinated miRNA release across different cells.

This study uncovers a new mechanism for miRNA export regulation in mammalian cells, driven by the RNA‐binding protein HuR. In macrophages, HuR cooperatively binds with miRNAs to export both low‐ and high‐affinity substrates, thereby influencing macrophage activation. This cooperative export method is a common strategy for coordinated miRNA release across different cell types.

## Linked entities

- **Proteins:** ELAVL1 (ELAV like RNA binding protein 1)

## Full-text entities

- **Genes:** Mirlet7a-1 (microRNA let7a-1) [NCBI Gene 387244] {aka Let-7a, Mirnlet7a, Mirnlet7a-1, let-7a-1}, Fmn1 (formin 1) [NCBI Gene 14260] {aka Fmn, formin-1, ld}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Rala (Ras like proto-oncogene A) [NCBI Gene 56044] {aka 3010001O15Rik, Ral, Rasl1}, ALYREF (Aly/REF export factor) [NCBI Gene 10189] {aka ALY, ALY/REF, BEF, REF, THOC4}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, MIR122 (microRNA 122) [NCBI Gene 406906] {aka MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A}, Mir122 (microRNA 122) [NCBI Gene 387231] {aka Mir122a, Mir122b, Mirn122a, Mirn122b, mir-122, mmu-mir-122}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Pnkp (polynucleotide kinase 3'- phosphatase) [NCBI Gene 59047] {aka 1810009G08Rik, PNK}, PCBP2 (poly(rC) binding protein 2) [NCBI Gene 5094] {aka HNRNPE2, HNRPE2, hnRNP-E2}, Elavl1 (ELAV like RNA binding protein 1) [NCBI Gene 15568] {aka 2410055N02Rik, HUR, Hua}, Pdcd6ip (programmed cell death 6 interacting protein) [NCBI Gene 18571] {aka Aip1, Alix, Eig2, mKIAA1375}, Stx5a (syntaxin 5A) [NCBI Gene 56389] {aka 0610031F24Rik, D19Ertd627e, Stx5}, MIR146A (microRNA 146a) [NCBI Gene 406938] {aka MIRN146, MIRN146A, miR-146a, miRNA146A}, Mapk14 (mitogen-activated protein kinase 14) [NCBI Gene 26416] {aka CSBP2, Crk1, Csbp1, Mxi2, PRKM14, PRKM15}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein) [NCBI Gene 10492] {aka GRY-RBP, GRYRBP, HNRNPQ, HNRPQ1, NSAP1, PP68}, Mir21a (microRNA 21a) [NCBI Gene 387140] {aka Mir21, Mirn21, mmu-mir-21, mmu-mir-21a}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1) [NCBI Gene 3181] {aka HNRNPA2, HNRNPB1, HNRPA2, HNRPA2B1, HNRPB1, IBMPFD2}, Mir155 (microRNA 155) [NCBI Gene 387173] {aka Mirn155, mir-155, mmu-mir-155}, Hgs (HGF-regulated tyrosine kinase substrate) [NCBI Gene 15239] {aka Hgr, Hrs, ZFYVE8, tn}, Ago2 (argonaute RISC catalytic subunit 2) [NCBI Gene 239528] {aka 1110029L17Rik, 2310051F07Rik, Eif2c2, Gerp95, Gm10365, mKIAA4215}, ELAVL1 (ELAV like RNA binding protein 1) [NCBI Gene 1994] {aka ELAV1, HUR, Hua, MelG}, YBX1 (Y-box binding protein 1) [NCBI Gene 4904] {aka BP-8, CBF-A, CSDA2, CSDB, DBPB, EFI-A}, Mir146 (microRNA 146) [NCBI Gene 387164] {aka Mirn146, miR-146a, mmu-mir-146}, FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}
- **Diseases:** mycoplasma (MESH:D009175), infection (MESH:D007239), inflammatory cytokines (MESH:D000080424), liver damage (MESH:D056486), glioblastoma (MESH:D005909), inflammation (MESH:D007249), Ld infection (MESH:D007896), NASH (MESH:D065626), fatty liver (MESH:D005234), Kala-azar (MESH:D007898)
- **Chemicals:** Dulbecco's modified Eagle's medium (-), glycerol (MESH:D005990), HEPES (MESH:D006531), amino acid (MESH:D000596), Lipofectamine 2000 (MESH:C086724), CO2 (MESH:D002245), EGTA (MESH:D004533), L-glutamine (MESH:D005973), IPTG (MESH:D007544), ATP (MESH:D000255), m6A (MESH:C005955), agarose (MESH:D012685), LPS (MESH:D008070), CHCl3 (MESH:D002725), sucrose (MESH:D013395), lipid (MESH:D008055), cycloheximide (MESH:D003513), PVDF (MESH:C024865), KCl (MESH:D011189), PBS (MESH:D007854), GW4869 (MESH:C468773), Optiprep (MESH:C044834), sodium deoxycholate (MESH:D003840), MgCl2 (MESH:D015636), doxycycline (MESH:D004318), nylon (MESH:D009757), EDTA (MESH:D004492), polyacrylamide (MESH:C016679), Triton X-100 (MESH:D017830), imidazole (MESH:C029899), water (MESH:D014867), TRIzol (MESH:C411644), SDS (MESH:D012967), isopropanol (MESH:D019840), HCl (MESH:D006851), CaCl2 (MESH:D002122), oligonucleotides (MESH:D009841), DTT (MESH:D004229)
- **Species:** Legionella sp. D (species) [taxon 66972], Homo sapiens (human, species) [taxon 9606], Cricetinae (hamsters, subfamily) [taxon 10026], Escherichia coli BL21 (strain) [taxon 511693], Leishmania donovani (species) [taxon 5661], Mus musculus (house mouse, species) [taxon 10090], Cricetus cricetus (black-bellied hamster, species) [taxon 10034], Mycoplasma (genus) [taxon 2093], Escherichia coli O111:B4 (no rank) [taxon 1090940]
- **Cell lines:** C6 glioblastoma — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_8926), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), Huh7 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0336), pHA-HuR — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_KT68), BL21DE3 — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), coli — Mus musculus (Mouse), Hybridoma (CVCL_C5CN), CCL-107 — Mus musculus (Mouse), Undefined cell line type (CVCL_M023), CRL-1573 — Sigmodon hispidus (Hispid cotton rat), Spontaneously immortalized cell line (CVCL_YD58), pET42a — Homo sapiens (Human), Transformed cell line (CVCL_2561), RAW 264 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), CVCL_1074 — Homo sapiens (Human), Transformed cell line (CVCL_7338), C6 — Rattus norvegicus (Rat), Rat malignant glioma, Cancer cell line (CVCL_0194)

## Full text

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## Figures

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## References

46 references — full list in the complete paper: https://tomesphere.com/paper/PMC12970685/full.md

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Source: https://tomesphere.com/paper/PMC12970685