# Phase Separation of Nucleic Acids: Mechanisms, Properties, and Applications

**Authors:** Weixiang Chen, Johann Fritzen, Andreas Walther

PMC · DOI: 10.1002/anie.202523943 · Angewandte Chemie (International Ed. in English) · 2026-02-04

## TL;DR

This paper reviews how long-chain nucleic acids can form condensates through phase separation, offering new insights and applications in nanotechnology and the study of life's origins.

## Contribution

The paper provides a comprehensive overview of temperature-induced phase separation of nucleic acids and its novel applications.

## Key findings

- Long-chain nucleic acids can form micrometer-sized condensates via temperature-induced phase separation.
- Phase separation leverages the polymeric nature of nucleic acids, distinct from base-pairing interactions.
- The phenomenon offers new applications in nanotechnology and insights into prebiotic compartmentalization.

## Abstract

Nucleic acids are essential biological macromolecules bearing genetic information and playing important roles in post‐transcriptional regulation. Given their high programmability based on Watson–Crick–Franklin base‐pairing interactions, synthetic DNA and RNA oligonucleotides have become versatile building blocks for programmable assembly of nanostructures, nanomachines, and macroscopic materials. Recent discoveries have shown that long‐chain nucleic acids can undergo temperature‐induced phase separation, enabling rapid and facile formation of micro‐sized, nucleic acid‐rich condensates. Unlike conventional DNA/RNA nanotechnology, which relies primarily on base‐pairing interactions, phase separation leverages the intrinsic polymeric nature of nucleic acids. While it expands the scope of DNA/RNA nanotechnology for new applications, nucleic acid phase separation also provides a fresh perspective for how compartmentalization may have emerged in the prebiotic RNA world during the origin of life. In this Minireview, we discuss the current mechanistic understanding of temperature‐induced phase separation of synthetic long‐chain DNA and RNA in vitro, in the absence of complex coacervation with proteins and polymers. We highlight strategies for controlling the physical and chemical properties of DNA condensates and review the progress and advances in developing them for various applications.

Recent discoveries have shown that single‐stranded long‐chain nucleic acids can undergo temperature‐induced phase separation, enabling formation of micrometer‐sized condensates. This Minireview discusses the current mechanistic understanding of this phenomenon, highlights strategies for controlling the physical and chemical properties of these condensates and summarizes advances in developing them for various applications.

## Full-text entities

- **Genes:** SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, KL (klotho) [NCBI Gene 9365] {aka HFTC3, KLA}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, NT5C (5', 3'-nucleotidase, cytosolic) [NCBI Gene 30833] {aka DNT, DNT1, HEL74, P5N2, PN-I, PN-II}, rA30 [NCBI Gene 474251], USB1 (U6 snRNA biogenesis phosphodiesterase 1) [NCBI Gene 79650] {aka C16orf57, HVSL1, Mpn1, PN, hMpn1, hUsb1}
- **Diseases:** LCST (MESH:D016638)
- **Chemicals:** hydrogen (MESH:D006859), G/A (MESH:D005708), poly(A) (MESH:D011061), Mg (MESH:D008274), ribose (MESH:D012266), Agarose (MESH:D012685), purine (MESH:C030985), U (MESH:D014501), umbelliferone (MESH:C031477), dansylfuran (-), Arg-Gly-Asp (MESH:C047981), adenine (MESH:D000225), CaCl2 (MESH:D002122), oligonucleotides (MESH:D009841), biotin (MESH:D001710), poly(T) (MESH:D011071), purines (MESH:D011687), water (MESH:D014867), cytosine (MESH:D003596), poly(U) (MESH:D011072), Uracil (MESH:D014498), polymer (MESH:D011108), thymine (MESH:D013941), guanine (MESH:D006147), C (MESH:D002244), gold (MESH:D006046), T (MESH:D014316), MgCl2 (MESH:D015636), deoxyribose (MESH:D003855), poly(G) (MESH:D011068), oxygen (MESH:D010100), P (MESH:D010758), phosphate (MESH:D010710), salt (MESH:D012492), sugar (MESH:D000073893)
- **Cell lines:** Hela — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), SC — Homo sapiens (Human), Embryonic stem cell (CVCL_6F20), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023)

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12970503/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12970503/full.md

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Source: https://tomesphere.com/paper/PMC12970503