# Protein Kinase R-like Endoplasmic Reticulum Kinase-Mediated ER-Mitochondria Coupling Regulates Odontogenic Differentiation of Human Dental Pulp Stem Cells Under Inflammatory Stimuli

**Authors:** Yiqing Wang, Yiqiao Li, Yu Jin, Zhipu Luo, Ruirui Liu

PMC · DOI: 10.1016/j.identj.2026.109440 · International Dental Journal · 2026-03-05

## TL;DR

This study shows how PERK in MAMs regulates the differentiation of dental pulp stem cells under inflammation, affecting calcium signaling and cell function.

## Contribution

The study reveals a novel PERK-centered mechanism in MAMs that controls inflammation-impaired odontogenic differentiation of hDPSCs.

## Key findings

- LPS activates PERK, increasing MAM-related molecules and ER-mitochondria coupling.
- PERK silencing reduces mitochondrial and ER damage and restores odontogenic potential.
- PERK suppresses mineralization by modulating IP3R-mediated calcium signaling in MAMs.

## Abstract

Human dental pulp stem cells (hDPSCs) play pivotal roles in the regeneration of pulp-dentin complex, yet their odontogenic differentiation is critically modulated by the inflammatory microenvironment. Protein kinase R-like endoplasmic reticulum kinase (PERK), a key regulator of endoplasmic reticulum stress, is highly enriched in mitochondria-associated endoplasmic reticulum membranes (MAMs) and exerts critical functions. However, its precise mechanisms in inflammatory regulation and cellular differentiation remain elusive. This study elucidates the PERK-centred regulatory mechanism in MAMs that governs inflammation-impaired odontogenic differentiation of hDPSCs, potentially involving IP3R-dependent calcium flux and dynamic protein interactions in MAMs.

Rat pulpitis models and in vitro lipopolysaccharide (LPS)-induced inflammatory models of hDPSCs were established to investigate the effects of PERK signalling in odontogenesis under inflammatory conditions. Lentivirus-mediated silencing of PERK was performed to evaluate its role in LPS-induced inflammation. Molecular mechanisms were analysed using RNA sequencing, immunofluorescence, and transmission electron microscopy analyses.

LPS stimulation activated the PERK signalling pathway, significantly upregulating MAM-related molecules (IP3R, VDAC1, GRP75) and enhancing PERK/VDAC1 colocalization and the formation of endoplasmic reticulum-mitochondria coupling structures. PERK silencing effectively mitigated LPS-induced mitochondrial swelling, ER dilatation, and calcium influx dysregulation, while restoring alkaline phosphatase activity and odontogenic differentiation potential. Mechanistically, PERK suppressed hDPSC mineralization by modulating IP3R-mediated calcium signalling pathway in MAMs.

This study demonstrates that LPS-induced inflammatory stress reprograms hDPSCs bioactivity via PERK-centric control of MAMs likely through quantitative enhancement, structure specialization, and functional potentiation. The underlying mechanisms may involve IP3R-mediated regulation of calcium ion influx and protein interactions within MAMs.

## Linked entities

- **Genes:** EIF2AK3 (eukaryotic translation initiation factor 2 alpha kinase 3) [NCBI Gene 9451], ITPR1 (inositol 1,4,5-trisphosphate receptor type 1) [NCBI Gene 3708], VDAC1 (voltage dependent anion channel 1) [NCBI Gene 7416], HSPA9 (heat shock protein family A (Hsp70) member 9) [NCBI Gene 3313]
- **Proteins:** EIF2AK3 (eukaryotic translation initiation factor 2 alpha kinase 3), ITPR1 (inositol 1,4,5-trisphosphate receptor type 1), VDAC1 (voltage dependent anion channel 1), HSPA9 (heat shock protein family A (Hsp70) member 9)
- **Diseases:** pulpitis (MONDO:0006937)
- **Species:** Rattus norvegicus (taxon 10116), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** Nfe2l2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 83619], EIF2AK2 (eukaryotic translation initiation factor 2 alpha kinase 2) [NCBI Gene 5610] {aka PKR, PPP1R83, PRKR}, Ddit3 (DNA-damage inducible transcript 3) [NCBI Gene 29467] {aka CHOP, CHOP-10, Chop10, Gadd153, RM4}, Eif2ak3 (eukaryotic translation initiation factor 2 alpha kinase 3) [NCBI Gene 13666] {aka Pek, Perk}, Hspa9 (heat shock protein family A (Hsp70) member 9) [NCBI Gene 291671] {aka Crp40, GRP-75, Hspa9a, PBP74}, SGCG (sarcoglycan gamma) [NCBI Gene 6445] {aka 35DAG, A4, DAGA4, DMDA, DMDA1, LGMD2C}, Itpr1 (inositol 1,4,5-trisphosphate receptor 1) [NCBI Gene 16438] {aka D6Pas2, Gm10429, IP3R 1, IP3R1, InsP3R, Ip3r}, Prkaa2 (protein kinase AMP-activated catalytic subunit alpha 2) [NCBI Gene 78975] {aka Ampk, Ampka2}, Ndufa13-ps1 (NADH:ubiquinone oxidoreductase subunit A13, pseudogene 1) [NCBI Gene 314759] {aka RGD1565358}, Mapk1 (mitogen activated protein kinase 1) [NCBI Gene 116590] {aka ERK-2, ERT1, Erk2, p42-MAPK}, Il17a (interleukin 17A) [NCBI Gene 301289] {aka CTLA-8, IL-17, IL-17A, Il17}, Sec61a1 (SEC61 translocon subunit alpha 1) [NCBI Gene 80843] {aka Sec61a}, Itpr1 (inositol 1,4,5-trisphosphate receptor, type 1) [NCBI Gene 25262] {aka I145TR, IP3R1, InsP3R, InsP3R1, P400}, A2m (alpha-2-macroglobulin) [NCBI Gene 24153] {aka A2MAC1, A2m1, A2maa, A2mb, Mam}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, Itpr3 (inositol 1,4,5-trisphosphate receptor, type 3) [NCBI Gene 25679] {aka IP3R-3, IP3R3, IP3R3X}, Pdia4 (protein disulfide isomerase family A, member 4) [NCBI Gene 116598] {aka ERp-72, Erp70, Erp72}, Dspp (dentin sialophosphoprotein) [NCBI Gene 25254] {aka Dsp, RDSP2}, Akt1 (AKT serine/threonine kinase 1) [NCBI Gene 24185] {aka Akt}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, HSPA9 (heat shock protein family A (Hsp70) member 9) [NCBI Gene 3313] {aka CRP40, CSA, EVPLS, GRP-75, GRP75, HEL-S-124m}, Il6 (interleukin 6) [NCBI Gene 24498] {aka ILg6, Ifnb2}, Cox5b (cytochrome c oxidase subunit 5B) [NCBI Gene 94194], Cacna1d (calcium voltage-gated channel subunit alpha1 D) [NCBI Gene 29716], Pdia3 (protein disulfide isomerase family A, member 3) [NCBI Gene 29468] {aka ER60, ERp57, Grp58}, Vdac1 (voltage-dependent anion channel 1) [NCBI Gene 83529], Dmp1 (dentin matrix acidic phosphoprotein 1) [NCBI Gene 25312] {aka AG1, DENTMAT, DMP-1}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56718] {aka Frap1, RAFT1}, Pdlim3 (PDZ and LIM domain 3) [NCBI Gene 114108] {aka Actn2lp, Alp}, Il2 (interleukin 2) [NCBI Gene 116562], Taok2 (TAO kinase 2) [NCBI Gene 64666] {aka Tao2}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 24383] {aka BARS-38, Gapd}, Vdac1 (voltage-dependent anion channel 1) [NCBI Gene 22333] {aka Vdac5, mVDAC1, mVDAC5}, EIF2AK3 (eukaryotic translation initiation factor 2 alpha kinase 3) [NCBI Gene 9451] {aka PEK, PERK, WRS}, Pdc (phosducin) [NCBI Gene 25343] {aka 33DPTP, MEKA, Rpr1}, Tnf (tumor necrosis factor) [NCBI Gene 24835] {aka RATTNF, TNF-alpha, Tnfa}, Cacna1d (calcium channel, voltage-dependent, L type, alpha 1D subunit) [NCBI Gene 12289] {aka 8430418G19Rik, Cach3, Cacn4, Cacnl1a2, Cav1.3, Cchl1a}, ITPR3 (inositol 1,4,5-trisphosphate receptor type 3) [NCBI Gene 3710] {aka CMT1J, IMD132, IMD133, IP3R, IP3R-3, IP3R3}, Pik3cb (phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta) [NCBI Gene 85243], Il1b (interleukin 1 beta) [NCBI Gene 24494] {aka IL-1F2}, VDAC1 (voltage dependent anion channel 1) [NCBI Gene 7416] {aka PORIN, VDAC-1}
- **Diseases:** periodontal diseases (MESH:D010510), MAMs (MESH:D015433), Dental pulp (MESH:D003788), pulpitis (MESH:D011671), cytotoxicity (MESH:D064420), ERS (MESH:D000079225), caries (MESH:D003731), dentin defect (MESH:D003805), periapical lesions (MESH:D010483), complex (MESH:D048090), lung injury (MESH:D055370), apical periodontitis (MESH:D010485), trauma (MESH:D014947), periodontitis (MESH:D010518), Inflammation (MESH:D007249), pulp necrosis (MESH:D003790), mitochondrial swelling (MESH:D028361), suppression (MESH:D000550)
- **Chemicals:** PVDF (MESH:C024865), glutaraldehyde (MESH:D005976), Alizarin Red S (MESH:C004468), Calcium (MESH:D002118), berberine (MESH:D001599), DAPI (MESH:C007293), magnesium (MESH:D008274), CO2 (MESH:D002245), Polybrene (MESH:D006583), LPS (MESH:D008070), paraformaldehyde (MESH:C003043), lipid (MESH:D008055), epoxy resin (MESH:D004853), uranyl acetate (MESH:C005460), BCIP (-), penicillin (MESH:D010406), SDS (MESH:D012967), alpha-MEM (MESH:C420642), ethanol (MESH:D000431), TRIzol (MESH:C411644), isoflurane (MESH:D007530), EDTA (MESH:D004492), xylene (MESH:D014992), Rhod-2 AM (MESH:C068483), streptomycin (MESH:D013307), 2-APB (MESH:C109986), Paraffin (MESH:D010232), osmium tetroxide (MESH:D009993)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

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## References

31 references — full list in the complete paper: https://tomesphere.com/paper/PMC12970396/full.md

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Source: https://tomesphere.com/paper/PMC12970396