# CRISPR-engineered human lung organoids with a biomolecular condensate reporter enable mechanistic toxicity monitoring

**Authors:** Seung-Yeon Kim, Ji-Won Baek, Eo Jin Kim, Sathiyaraj Srinivasan, Kee K. Kim, Eun-Mi Kim

PMC · DOI: 10.1016/j.mtbio.2026.102972 · Materials Today Bio · 2026-02-26

## TL;DR

Scientists created lung organoids with a built-in reporter to track cellular stress in real time, offering a new way to assess chemical toxicity in human lungs.

## Contribution

A CRISPR-engineered lung organoid with a G3BP1–mCherry reporter enables live, non-destructive monitoring of stress granules for toxicity assessment.

## Key findings

- Stress granule dynamics serve as an early and sensitive biomarker of chemical stress in human lung organoids.
- Lung organoids are more chemically sensitive than traditional 2D or cancer-derived models.
- Stress granule formation precedes epithelial injury and correlates with barrier integrity changes.

## Abstract

Understanding how chemical stress perturbs human lung physiology requires models that capture dynamic molecular responses in real time. Here, we established a CRISPR/Cas9-engineered human induced pluripotent stem cell (hiPSC)-derived lung organoid expressing endogenous G3BP1–mCherry, enabling live, non-destructive visualization of stress granule (SG) formation under toxicant exposure. The organoids recapitulated airway and alveolar epithelial diversity and displayed lamellar body-like ultrastructures, indicating advanced maturation. Time-lapse imaging revealed rapid and reversible SG dynamics across chemically distinct stressors, while cytotoxicity assays showed that these organoids are significantly more sensitive than conventional 2D or cancer-derived lung models. Importantly, SG dynamics were linked to exposure duration–dependent changes in epithelial barrier integrity, indicating that SG formation precedes overt epithelial injury and serves as an early indicator of toxicant-induced cellular stress. Integration with high-content screening enabled quantitative, image-based analysis of cellular stress phenotypes, greatly enhancing throughput and mechanistic insight, thereby provided next-generation New Approach Methodologies for lung toxicity assessment. Together, this hiPSC-derived lung organoid SG reporter platform links early molecular stress adaptation to tissue-level responses, offering a predictive and mechanistically informative framework for human-relevant lung toxicity evaluation.

Image 1

•CRISPR-engineered human lung organoids express endogenous G3BP1–mCherry reporter.•Live imaging enables rapid and reversible visualization of stress granules.•Stress granule dynamics act as an early and sensitive biomarker of chemical stress.•Lung organoids show higher chemical sensitivity than immortalized and cancer cell models.•Reporter enables non-destructive, real-time monitoring of lung toxicant responses.

CRISPR-engineered human lung organoids express endogenous G3BP1–mCherry reporter.

Live imaging enables rapid and reversible visualization of stress granules.

Stress granule dynamics act as an early and sensitive biomarker of chemical stress.

Lung organoids show higher chemical sensitivity than immortalized and cancer cell models.

Reporter enables non-destructive, real-time monitoring of lung toxicant responses.

## Linked entities

- **Genes:** G3BP1 (G3BP stress granule assembly factor 1) [NCBI Gene 10146]
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** TIA1 (TIA1 cytotoxic granule associated RNA binding protein) [NCBI Gene 7072] {aka ALS26, TIA-1, WDM}, AGER (advanced glycosylation end-product specific receptor) [NCBI Gene 177] {aka RAGE, SCARJ1, sRAGE}, SFTPC (surfactant protein C) [NCBI Gene 6440] {aka BRICD6, PSP-C, SFTP2, SMDP2, SP-C}, PDPN (podoplanin) [NCBI Gene 10630] {aka AGGRUS, D2-40, GP36, GP40, Gp38, HT1A-1}, FGF10 (fibroblast growth factor 10) [NCBI Gene 2255] {aka LADD3}, KRT5 (keratin 5) [NCBI Gene 3852] {aka CK5, DDD, DDD1, EBS1, EBS2, EBS2A}, G3bp1 (G3BP stress granule assembly factor 1) [NCBI Gene 27041] {aka B430204O07, G3bp, mKIAA4115}, EIF3A (eukaryotic translation initiation factor 3 subunit A) [NCBI Gene 8661] {aka EIF3, EIF3S10, P167, TIF32, eIF3-p170, eIF3-theta}, BMP4 (bone morphogenetic protein 4) [NCBI Gene 652] {aka BMP2B, BMP2B1, MCOPS6, OFC11, ZYME}, FOXJ1 (forkhead box J1) [NCBI Gene 2302] {aka CILD43, FKHL13, HFH-4, HFH4}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, SFTPB (surfactant protein B) [NCBI Gene 6439] {aka PSP-B, SFTB3, SFTP3, SMDP1, SP-B}, SCGB1A1 (secretoglobin family 1A member 1) [NCBI Gene 7356] {aka CC10, CC16, CCPBP, CCSP, UGB, UP-1}, HOPX (HOP homeobox) [NCBI Gene 84525] {aka CAMEO, HOD, HOP, LAGY, NECC1, OB1}, PAX6 (paired box 6) [NCBI Gene 5080] {aka AN, AN1, AN2, ASGD5, D11S812E, FVH1}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, FGF7 (fibroblast growth factor 7) [NCBI Gene 2252] {aka HBGF-7, KGF}, BLNK (B cell linker) [NCBI Gene 29760] {aka AGM4, BASH, BLNK-S, LY57, SLP-65, SLP65}, PABPC1 (poly(A) binding protein cytoplasmic 1) [NCBI Gene 26986] {aka PAB1, PABP, PABP1, PABPC2, PABPL1}, NANOG (Nanog homeobox) [NCBI Gene 79923], KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, AQP5 (aquaporin 5) [NCBI Gene 362] {aka AQP-5, PPKB}, G3BP1 (G3BP stress granule assembly factor 1) [NCBI Gene 10146] {aka G3BP, HDH-VIII}, FOXA2 (forkhead box A2) [NCBI Gene 3170] {aka HNF-3-beta, HNF3B, TCF3B}, SCGB3A2 (secretoglobin family 3A member 2) [NCBI Gene 117156] {aka LU103, PNSP1, UGRP1, pnSP-1}, SOX17 (SRY-box transcription factor 17) [NCBI Gene 64321] {aka PPH7, VUR3}, CPM (carboxypeptidase M) [NCBI Gene 1368], TP63 (tumor protein p63) [NCBI Gene 8626] {aka AIS, B(p51A), B(p51B), EEC3, KET, LMS}, KRT17 (keratin 17) [NCBI Gene 3872] {aka 39.1, CK-17, K17, PC2, PCHC1}, EPCAM (epithelial cell adhesion molecule) [NCBI Gene 4072] {aka Ber-Ep4, BerEp4, DIAR5, EGP-2, EGP314, EGP40}, EIF4E (eukaryotic translation initiation factor 4E) [NCBI Gene 1977] {aka AUTS19, CBP, EIF4E1, EIF4EL1, EIF4F, eIF-4E}, TJP1 (tight junction protein 1) [NCBI Gene 7082] {aka ZO-1}, MUC1 (mucin 1, cell surface associated) [NCBI Gene 4582] {aka ADMCKD, ADMCKD1, ADTKD2, CA 15-3, CD227, Ca15-3}, GATA4 (GATA binding protein 4) [NCBI Gene 2626] {aka ASD2, TACHD, TOF, VSD1}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, MUC5AC (mucin 5AC, oligomeric mucus/gel-forming) [NCBI Gene 4586] {aka MUC5, TBM, leB, mucin}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, DES (desmin) [NCBI Gene 1674] {aka CDCD3, CSM1, CSM2, LGMD1D, LGMD1E, LGMD2R}
- **Diseases:** cancer (MESH:D009369), Lung (MESH:D008171), lung cancer (MESH:D008175), fibrosis (MESH:D005355), injury (MESH:D014947), respiratory toxicity (MESH:D012140), acute (MESH:D000208), lung adenocarcinoma (MESH:D000077192), respiratory dysfunction (MESH:D012131), COVID-19 (MESH:D000086382), cytotoxic (MESH:D064420), Teratoma (MESH:D013724), epithelial injury (MESH:D009375), SG (MESH:D000079225), viral infection (MESH:D014777), tissue injury (MESH:D017695)
- **Chemicals:** DPBS (MESH:C012939), streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), isocyanate (MESH:D017953), SDS (MESH:D012967), 2-Octyl-4-isothiazolin-3-one (MESH:C035331), acrylonitrile (MESH:D000181), isothiazolinone (MESH:C001490), GlutaMAX (MESH:C054122), 5-aza-2'-deoxycytidine (MESH:D000077209), water (MESH:D014867), quaternary ammonium compound (MESH:D000644), 1,2-benzisothiazolin-3-one (MESH:C015699), TRIzol (MESH:C411644), CHIR99021 (MESH:C473711), IBMX (MESH:D015056), Hoechst 33342 (MESH:C017807), Sodium arsenite (MESH:C017947), dexamethasone (MESH:D003907), H&amp;E (MESH:D006371), phenyl isocyanate (MESH:C025319), BAC (MESH:D001548), 1,2-benzisothiazolone (-), hematoxylin (MESH:D006416), penicillin (MESH:D010406), all-trans retinoic acid (MESH:D014212), PVDF (MESH:C024865), PBS (MESH:D007854), eosin (MESH:D004801), glutaraldehyde (MESH:D005976), arsenite (MESH:C015001), PHMG (MESH:C060540), reactive oxygen species (MESH:D017382), dimethyl sulfoxide (MESH:D004121), formaldehyde (MESH:D005557), DDAC (MESH:C027118), glucose (MESH:D005947), CO2 (MESH:D002245), TRITC (MESH:C009434), SB431542 (MESH:C459179), agarose (MESH:D012685)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** E12sg-1 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z707), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), CMC-hiPSC-009 — Gallus gallus (Chicken), Induced pluripotent stem cell (CVCL_YE48), DCIF10A — Mus musculus (Mouse), Hybridoma (CVCL_C4R4), LCO — Homo sapiens (Human), Lung squamous cell carcinoma, Cancer cell line (CVCL_3008), SNU-2689-CO — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_YD37)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12969800/full.md

## References

65 references — full list in the complete paper: https://tomesphere.com/paper/PMC12969800/full.md

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Source: https://tomesphere.com/paper/PMC12969800