# A 4-guanidinobutanoic acid-SLC36A1 axis drives a microbiota‒host feedback loop to regulate intestinal homeostasis

**Authors:** Jianming Yang, Yawen Xiao, Jifang Cui, Ruofan Song, Wanxia Ma, Jiangpeng Liu, Chunhui Miao, Xinyu Sun, Xueting Kong, Zhi-Song Zhang, Lu Zhou, Zhi Yao, Quan Wang

PMC · DOI: 10.1080/19490976.2026.2639216 · Gut Microbes · 2026-03-04

## TL;DR

A microbial metabolite, 4-GBA, helps maintain gut health by enhancing intestinal stem cells and promoting beneficial bacteria, offering new therapeutic strategies for ulcerative colitis.

## Contribution

The discovery of a novel microbiota-host feedback loop involving 4-GBA and SLC36A1 that regulates intestinal homeostasis.

## Key findings

- 4-GBA enhances intestinal stem cell function and goblet cell differentiation.
- SLC36A1 expression inversely correlates with ulcerative colitis severity in human samples.
- The SLC36A1 agonist sarcosine attenuates colitis in mice.

## Abstract

The role of gut microbiota‒derived metabolites in regulating the intestinal mucosal barrier remains poorly defined. Here, we identified 4-guanidinobutanoic acid (4-GBA), produced by Bacteroides stercorirosoris, as a critical regulator of intestinal homeostasis. Using untargeted metabolomics, organoid co-cultures, mouse models, and single-cell RNA sequencing, we demonstrated that 4-GBA enhances intestinal stem cells (ISCs) function and goblet cell differentiation. This promotes Akkermansia muciniphila enrichment through mucus-dependent niche expansion, establishing a microbiota‒host feedback loop. Mechanistically, 4-GBA upregulates the proton-coupled amino acid transporter SLC36A1 and activates the Hedgehog signaling pathway to drive epithelial reprogramming. Clinically, SLC36A1 expression inversely correlates with ulcerative colitis (UC) severity in human samples. Furthermore, the SLC36A1 agonist sarcosine enhances barrier homeostasis and attenuates colitis in mice, highlighting the diagnostic and therapeutic potential of this axis in UC. Our findings reveal a novel microbiome–host axis through which a microbial metabolite modulates epithelial function and microbial ecology, offering a potential therapeutic strategy targeting microbiota–epithelial crosstalk for UC management.

## Linked entities

- **Genes:** SLC36A1 (solute carrier family 36 member 1) [NCBI Gene 206358]
- **Chemicals:** 4-guanidinobutanoic acid (PubChem CID 500), sarcosine (PubChem CID 1088)
- **Diseases:** ulcerative colitis (MONDO:0005101)
- **Species:** Bacteroides stercorirosoris (taxon 871324), Akkermansia muciniphila (taxon 239935)

## Full-text entities

- **Genes:** Gli1 (GLI-Kruppel family member GLI1) [NCBI Gene 14632] {aka Zfp-5, Zfp5}, Dnase1 (deoxyribonuclease I) [NCBI Gene 13419] {aka DNaseI, Dnl1}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, Tff3 (trefoil factor 3, intestinal) [NCBI Gene 21786] {aka ITF, mITF}, Adgre1 (adhesion G protein-coupled receptor E1) [NCBI Gene 13733] {aka DD7A5-7, EGF-TM7, Emr1, F4/80, Gpf480, Ly71}, Reg3b (regenerating islet-derived 3 beta) [NCBI Gene 18489] {aka HIP, PAP1, Pap, REG-III}, Atoh1 (atonal bHLH transcription factor 1) [NCBI Gene 11921] {aka Hath1, MATH-1, Math1, bHLHa14}, Muc2 (mucin 2) [NCBI Gene 17831] {aka 2010015E03Rik, MCM, wnn}, Cxcl1 (C-X-C motif chemokine ligand 1) [NCBI Gene 14825] {aka Fsp, Gro1, KC, Mgsa, N51, Scyb1}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, Il4 (interleukin 4) [NCBI Gene 16189] {aka BSF-1, Il-4}, Dclk1 (doublecortin-like kinase 1) [NCBI Gene 13175] {aka 1700113D08Rik, 2810480F11Rik, Click-I, Cpg16, Dcamkl1, Dcl}, Foxp3 (forkhead box P3) [NCBI Gene 20371] {aka JM2, scurfin, sf}, Lgr5 (leucine rich repeat containing G protein coupled receptor 5) [NCBI Gene 14160] {aka FEX, Gpr49}, Spdef (SAM pointed domain containing ets transcription factor) [NCBI Gene 30051] {aka PDEF, Pse}, H11 (histocompatibility 11) [NCBI Gene 104200] {aka H-11}, Slc36a1 (solute carrier family 36 (proton/amino acid symporter), member 1) [NCBI Gene 215335] {aka 5830411H19Rik, Pat1}, GLI1 (GLI family zinc finger 1) [NCBI Gene 2735] {aka GLI, PAPA8, PPD1}, Ocln (occludin) [NCBI Gene 18260] {aka Ocl}, PTCH1 (patched 1) [NCBI Gene 5727] {aka BCNS, BCNS1, NBCCS, PTC, PTC1, PTCH}, Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, Ccl2 (C-C motif chemokine ligand 2) [NCBI Gene 20296] {aka HC11, JE, MCAF, MCP-1, MCP1, SMC-CF}, Ly6g (lymphocyte antigen 6 family member G) [NCBI Gene 546644] {aka Gr-1, Gr1, Ly-6G}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Reg3g (regenerating islet-derived 3 gamma) [NCBI Gene 19695] {aka REG-3-gamma, reg III-gamma}, Itgax (integrin alpha X) [NCBI Gene 16411] {aka Cd11c, Cr4, N418}, Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, H2 (histocompatibility-2, MHC) [NCBI Gene 111364] {aka H-2, MHC-II}, Ascl2 (achaete-scute family bHLH transcription factor 2) [NCBI Gene 17173] {aka 2410083I15Rik, Mash2, bHLHa45}, Crp (C-reactive protein, pentraxin-related) [NCBI Gene 12944], Sox9 (SRY (sex determining region Y)-box 9) [NCBI Gene 20682] {aka 2010306G03Rik, mKIAA4243, mSox9}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, SLC36A1 (solute carrier family 36 member 1) [NCBI Gene 206358] {aka Dct1, LYAAT1, PAT1, TRAMD3}, Itgam (integrin alpha M) [NCBI Gene 16409] {aka CD11b/CD18, CR3, CR3A, Cd11b, F730045J24Rik, Ly-40}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Il2ra (interleukin 2 receptor, alpha chain) [NCBI Gene 16184] {aka CD25, Il2r, Ly-43}, Chga (chromogranin A) [NCBI Gene 12652] {aka ChrA, cgA}, Ptch1 (patched 1) [NCBI Gene 19206] {aka A230106A15Rik, Ptc, Ptc1, Ptch, mes, wig}
- **Diseases:** gut disorders (MESH:C536735), C. rodentium infection (MESH:D007239), colitis (MESH:D003092), weight loss (MESH:D015431), epithelial hyperplasia (MESH:D017573), gastric injury (MESH:D013272), IBD (MESH:D015212), mucosal (MESH:D052016), alcoholic heart disease (MESH:D006331), pulmonary fibrosis (MESH:D011658), tissue (MESH:D017695), UC (MESH:D003093), colonic inflammatory disorders (MESH:D003108), abscess (MESH:D000038), inflammation (MESH:D007249), injury (MESH:D014947), neuropsychiatric disorders (MESH:D001523), edema (MESH:D004487)
- **Chemicals:** H2O2 (MESH:D006861), 4-Guanidinobutanoic acid (-), Percoll (MESH:C016039), H&amp;E (MESH:D006371), hematoxylin (MESH:D006416), betaine (MESH:D001622), puromycin (MESH:D011691), corn oil (MESH:D003314), forskolin (MESH:D005576), acetone (MESH:D000096), arginine (MESH:D001120), Ben (MESH:D001591), N-(3-dimethylaminopropyl)-N'-ethylcarbodiimide (MESH:C569779), dextran sulfate sodium (MESH:D016264), ampicillin (MESH:D000667), taurine (MESH:D013654), Sodium butyrate (MESH:D020148), CO2 (MESH:D002245), citrate (MESH:D019343), 4-hydroxytamoxifen (MESH:C016601), sucrose (MESH:D013395), L-cysteine (MESH:D003545), paraformaldehyde (MESH:C003043), polybrene (MESH:D006583), agarose (MESH:D012685), Ectoine (MESH:C045628), PBS (MESH:D007854), eosin (MESH:D004801), 3,3'-diaminobenzidine (MESH:D015100), vigabatrin (MESH:D020888), DMSO (MESH:D004121), DAPI (MESH:C007293), capric acid (MESH:C031071), Periodic Acid (MESH:D010504), EDC (MESH:C024565), neomycin (MESH:D009355), 4-OHT (MESH:C032278), paraffin (MESH:D010232), 3-nitrophenylhydrazine (MESH:C523491), OCT (MESH:C051883), Brefeldin A (MESH:D020126), proline (MESH:D011392), methanol (MESH:D000432), AS1842856 (MESH:C553926), formic acid (MESH:C030544), SQ22536 (MESH:C017759), Tamoxifen (MESH:D013629), Cy5.5 (MESH:C098793), FITC (MESH:D016650), xylene (MESH:D014992), PEG (MESH:D011092), EDTA (MESH:D004492), agmatine (MESH:D000376), agar (MESH:D000362), Triton X-100 (MESH:D017830), BEN (MESH:C492379), metronidazole (MESH:D008795), water (MESH:D014867), nalidixic acid (MESH:D009268), luminal (MESH:D010634)
- **Species:** Akkermansia muciniphila (species) [taxon 239935], Bacteroides intestinalis (species) [taxon 329854], Bacteroides (genus) [taxon 816], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Homo sapiens (human, species) [taxon 9606], Clostridioides difficile (species) [taxon 1496], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Bacteroidia (class) [taxon 200643], Mus musculus (house mouse, species) [taxon 10090], Bacteroides stercorirosoris (species) [taxon 871324], C. elegans [taxon 328850], Citrobacter rodentium (species) [taxon 67825]
- **Cell lines:** C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12969751/full.md

## References

47 references — full list in the complete paper: https://tomesphere.com/paper/PMC12969751/full.md

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Source: https://tomesphere.com/paper/PMC12969751