# Engineering Yarrowia lipolytica for nervonic acid production by organelle compartmentalization and dynamic promoter coordination

**Authors:** Sen Ye, Wenjing He, Niping Yang, Qian He, Jingwen Zhou, Yu Xia

PMC · DOI: 10.1016/j.synbio.2026.02.004 · Synthetic and Systems Biotechnology · 2026-03-04

## TL;DR

This study engineered the yeast Yarrowia lipolytica to produce nervonic acid, a compound important for nerve repair, using metabolic engineering techniques.

## Contribution

The study introduces an integrated strategy combining organelle compartmentalization and dynamic promoter coordination to enhance nervonic acid production.

## Key findings

- The engineered strain achieved 451.80 mg/L of nervonic acid in shake-flask culture.
- Fed-batch fermentation in a 5-L bioreactor yielded 6.55 g/L, with nervonic acid comprising 29.81% of total fatty acids.
- Optimized β-ketoacyl-CoA synthases and precursor availability improved nervonic acid accumulation.

## Abstract

Nervonic acid (NA) is of great significance in repairing damaged nerve fibers and promoting the regeneration of neural cells. This study aimed to construct a Yarrowia lipolytica strain capable of producing NA. The β-oxidation pathway was first disrupted and evaluated β-ketoacyl-CoA synthases (KCSs) with different substrate specificities. The substrate specificity of KCS was further optimized through semi-rational design. Oleic acid biosynthesis and the desaturation of tetracosanoic acid (C24:0) were enhanced to increase precursor availability. Furthermore, organelle compartmentalization and dynamic promoter coordination were implemented to synergistically improve NA accumulation. Finally, an orthogonal malonyl-CoA biosynthetic route was introduced together with an NADPH regeneration system to boost reducing power supply, leading to a substantial increase in production. The engineered strain achieved a titer of 451.80 mg/L in shake-flask culture, and reached 6.55 g/L during fed-batch fermentation in a 5-L bioreactor, where NA accounted for 29.81% of TFAs. This study presents an integrated metabolic engineering strategy providing novel insights into the microbial biosynthesis of NA.

## Linked entities

- **Chemicals:** nervonic acid (PubChem CID 5281120), oleic acid (PubChem CID 445639), tetracosanoic acid (PubChem CID 11197), malonyl-CoA (PubChem CID 644066), NADPH (PubChem CID 5884)
- **Species:** Yarrowia lipolytica (taxon 4952)

## Full-text entities

- **Genes:** FTR1 (high-affinity iron permease FTR1) [NCBI Gene 856888]
- **Diseases:** KCS (MESH:C566566), cognitive impairment (MESH:D003072), neurodegenerative diseases (MESH:D019636), neurological disorders (MESH:D009461)
- **Chemicals:** C20:1 Delta11-CoA (-), palmitoleic acid (MESH:C008757), helium (MESH:D006371), polyunsaturated fatty acids (MESH:D005231), acyl-CoA (MESH:D000214), NADPH (MESH:D009249), amino acids (MESH:D000596), TFAs (MESH:D014269), LPA (MESH:D010649), Fatty acids (MESH:D005227), ampicillin (MESH:D000667), behenic acid (MESH:C007547), VLCFA (MESH:C017364), lignoceric acid (MESH:C010210), palmitic acid (MESH:D019308), DHA (MESH:D004281), lipid (MESH:D008055), ammonium sulfate (MESH:D000645), Pyr (MESH:D009242), Oleic acid (MESH:D019301), oleoyl-CoA (MESH:C017585), DAG (MESH:D004075), DHAP (MESH:D004099), Glucose (MESH:D005947), H2SO4 (MESH:C033158), DPA (MESH:C026219), pyruvate (MESH:D019289), linoleic acid (MESH:D019787), methanol (MESH:D000432), PA (MESH:D011478), n-hexane (MESH:C026385), Oxygen (MESH:D010100), erucoyl-CoA (MESH:C024901), ammonia (MESH:D000641), erucic acid (MESH:C049811), N (MESH:D009584), triacylglycerol (MESH:D014280), agar (MESH:D000362), phosphatidic acid (MESH:D010712), C (MESH:D002244), glyceraldehyde 3-phosphate (MESH:D005986), pentose phosphate (MESH:D010428), EPA (MESH:D015118), glycerol-3-phosphate (MESH:C029620), FFA (MESH:D005230), C18:0 (MESH:C031183), acetyl-CoA (MESH:D000105), iron (MESH:D007501), arachidic acid (MESH:C094477), malonyl-CoA (MESH:D008316), cis-11-eicosenoic acid (MESH:C572289), lysophosphatidic acid (MESH:C032881), NA (MESH:C013147), NaOH (MESH:D012972)
- **Species:** Crambe hispanica subsp. abyssinica (Abyssinian crambe, subspecies) [taxon 3721], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Lunaria annua (annual honesty, species) [taxon 153659], Zea mays (maize, species) [taxon 4577], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Veronaea sp. HB (species) [taxon 1785743], Cardamine graeca (species) [taxon 352368], Mortierella alpina (species) [taxon 64518], Homo sapiens (human, species) [taxon 9606], Mucor circinelloides (species) [taxon 36080], Yarrowia lipolytica PO1f (strain) [taxon 1445506], Malania oleifera (species) [taxon 397392], Teesdalia nudicaulis (species) [taxon 165363], Natronorubrum sp. A31 (species) [taxon 884418], Rhodotorula toruloides (species) [taxon 5286], Escherichia coli (E. coli, species) [taxon 562], Vitreoscilla (genus) [taxon 59], Yarrowia lipolytica (species) [taxon 4952], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Natronorubrum sp. A30 (species) [taxon 884421]
- **Mutations:** C) for 24, E294A, E130A, L in 140
- **Cell lines:** NA26 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_7082), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12969333/full.md

## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC12969333/full.md

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Source: https://tomesphere.com/paper/PMC12969333