# Evolutionarily entrenched odorant receptors for (E)-β-farnesene signaling in Aphidinae aphids

**Authors:** Tianyu Huang, Lulu Yang, Ying Tian, Bo Wang, Wenbiao Liu, Penghua Bai, Yang Liu, Frédéric Francis, Xu Cheng, Bing Wang, Guirong Wang

PMC · DOI: 10.1016/j.isci.2026.114785 · iScience · 2026-01-29

## TL;DR

Aphidinae aphids use specific odorant receptors to detect an alarm pheromone, and these receptors are evolutionarily conserved.

## Contribution

The study identifies three conserved odorant receptors that selectively detect the alarm pheromone (E)-β-farnesene in Aphidinae aphids.

## Key findings

- Three odorant receptors (OR5, OR40, OR43) are selective detectors for the alarm pheromone (E)-β-farnesene in Aphidinae aphids.
- Knockdown of these receptors suppressed EBF-induced repellency in Acyrthosiphon pisum.
- OR gene loss occurred only in lineages that no longer use EBF as an alarm signal.

## Abstract

Alarm pheromones are crucial for the survival of social insects, enabling coordinated escape from predators. Their evolution has co-evolved with the development of olfactory recognition systems, suggesting specific molecular mechanisms underlie this adaptive relationship. We analyzed alarm pheromone compositions across 36 aphid species and found that EBF serves as the sole or primary alarm signal in the Aphidinae subfamily. Genomic annotation of 13 aphid species identified eight conserved, Aphidinae-specific odorant receptor (OR) clades under strong purifying selection. Three receptors—OR5, OR40, and OR43—were EBF-selective in Aphidinae species. Their individual or collective knockdown suppressed EBF-induced repellency in Acyrthosiphon pisum, indicating non-redundant roles in receptor combinational coding. Phylogenetic analyses demonstrated variation in gene age among these receptors, with losses confined to species that do not use EBF as an alarm signal. This study demonstrates a multi-receptor system for EBF detection in Aphidinae aphids and advances the understanding of olfactory system evolution.

•Identified three conserved ORs as selective detectors for the alarm pheromone EBF•Silencing OR5, OR40, or OR43, singly or together, blocked EBF-induced repellency in aphids•Phylogenetics reveals that OR gene loss occurred exclusively in lineages losing EBF usage

Identified three conserved ORs as selective detectors for the alarm pheromone EBF

Silencing OR5, OR40, or OR43, singly or together, blocked EBF-induced repellency in aphids

Phylogenetics reveals that OR gene loss occurred exclusively in lineages losing EBF usage

Evolutionary Biology; Molecular Biology and Genetics; Neurobiology and Sensory Systems; Chemical Ecology; Entomology and Insect Physiology

## Linked entities

- **Genes:** Or-5 (olfactory receptor 5) [NCBI Gene 692472], OR3A1 (olfactory receptor family 3 subfamily A member 1) [NCBI Gene 4994], Or43 (odorant receptor 43) [NCBI Gene 23687714]
- **Chemicals:** (E)-β-farnesene (PubChem CID 5281517), EBF (PubChem CID 145915877)
- **Species:** Acyrthosiphon pisum (taxon 7029)

## Full-text entities

- **Chemicals:** beta-pinene (MESH:C010789), DMSO (MESH:D004121), geosmin (MESH:C001278), NaOH (MESH:D012972), KCl (MESH:D011189), perylene diimide (MESH:C521332), CaCl2 (MESH:D002122), TRIzol (MESH:C411644), sesquiterpene (MESH:D012717), terpenoids (MESH:D013729), cis-jasmone (MESH:C086299), alpha-pinene (MESH:C005451), monoterpenes (MESH:D039821), GA (MESH:C432872), benzaldehyde (MESH:C032175), amino acids (MESH:D000596), Hexane (MESH:D006586), paraffin oil (MESH:C015418), HEPES (MESH:D006531), (E)-beta-farnesene (-), MgCl2 (MESH:D015636), ethyl acetate (MESH:C007650), germacrene A (MESH:C471077), NaCl (MESH:D012965)
- **Species:** Drosophila melanogaster (fruit fly, species) [taxon 7227], Myzus cerasi (black cherry aphid, species) [taxon 93721], Xenopus laevis (African clawed frog, species) [taxon 8355], Aphis gossypii (cotton aphid, species) [taxon 80765], Aphidomorpha (aphids, infraorder) [taxon 33380], Hormaphis cornu (species) [taxon 30177], Aphis glycines (soybean aphid, species) [taxon 307491], Bactrocera dorsalis (oriental fruit fly, species) [taxon 27457], Sitobion miscanthi (species) [taxon 44668], Myzus persicae (green peach aphid, species) [taxon 13164], Acyrthosiphon pisum (pea aphid, species) [taxon 7029], Cinara cedri (species) [taxon 506608], Therioaphis trifolii (yellow clover aphid, species) [taxon 935269], Drepanosiphum platanoidis (species) [taxon 527648], Apis (genus) [taxon 7459], Homo sapiens (human, species) [taxon 9606], Streptomyces sp. FLA (species) [taxon 375060], Rhopalosiphum maidis (corn leaf aphid, species) [taxon 43146], Megoura viciae (vetch aphid, species) [taxon 112273], Diuraphis noxia (Russian wheat aphid, species) [taxon 143948], Echiniscoides sp. Lan (species) [taxon 1196124], Pentalonia nigronervosa (banana aphid, species) [taxon 693967], Rhopalosiphum padi (bird cherry-oat aphid, species) [taxon 40932], pisum [taxon 3887], Eriosoma lanigerum (woolly apple aphid, species) [taxon 133082], Sipha flava (yellow sugarcane aphid, species) [taxon 143950], Apolygus lucorum (species) [taxon 248454]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12969152/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12969152/full.md

## References

71 references — full list in the complete paper: https://tomesphere.com/paper/PMC12969152/full.md

---
Source: https://tomesphere.com/paper/PMC12969152