# Mitochondrial permeability transition pore desensitization by a novel dispiranic derivative prevents cardiac reperfusion injury

**Authors:** Giampaolo Morciano, Gaia Pedriali, Giulia Turrin, Cristina Algieri, Esther Densu Agyapong, Debora La Mantia, Chiara Bernardini, Giorgia Canini, Anna Fantinati, Elena Nicoletta Colarusso, Fabio Mollica, Daniela Ramaccini, Alessandra Pagliarani, Carlotta Giorgi, Elena Tremoli, Alessandro Arcovito, Salvatore Nesci, Claudio Trapella, Paolo Pinton

PMC · DOI: 10.1016/j.redox.2026.104097 · Redox Biology · 2026-02-19

## TL;DR

A new compound prevents heart damage during reperfusion by inhibiting mitochondrial pore opening without harming cell energy production.

## Contribution

A novel dispiranic compound (11d) is identified as a selective PTP desensitizer targeting ATP synthase c subunit.

## Key findings

- Compound 11d inhibits PTP opening by ~70% in human cardiomyocytes at low micromolar concentrations.
- 11d selectively binds to ATP synthase c-ring and reduces cell death and ROS in hypoxia/reoxygenation models.
- Ex vivo heart models show 11d improves cardiac recovery and reduces infarct cell death during reperfusion.

## Abstract

Mitochondrial permeability transition pore (PTP) opening is a major determinant of cardiac ischemia/reperfusion (I/R) injury, contributing to cardiomyocyte death and impaired cardiac function following revascularization. Despite extensive research, effective pharmacological strategies targeting PTP remain limited. Here, we report the identification and characterization of a novel class of dispiranic small molecules designed to inhibit PTP opening by targeting the c subunit of FO-ATP synthase. Using a multidisciplinary approach combining chemical synthesis, cellular and mitochondrial assays, ex vivo cardiac models and in silico analyses, we identified compound 11d as a potent and selective PTP desensitizer. In living human cardiomyocytes, 11d inhibited PTP opening by approximately 70% at low micromolar concentrations without impairing mitochondrial bioenergetics under basal conditions. Mechanistically, 11d selectively inhibited Ca2+-activated F1FO-ATP synthase activity, consistent with PTP modulation, while sparing Mg2+-dependent ATP synthesis and succinate oxidase activity. Molecular docking and molecular dynamics simulations revealed stable binding of 11d within the canonical oligomycin-binding pocket of the ATP synthase c-ring, a finding corroborated by cellular thermal shift assays and subcellular fractionation showing preferential mitochondrial accumulation. Functionally, 11d significantly reduced cell death, mitochondrial reactive oxygen species (ROS) production and PTP opening in cardiomyocytes and endothelial cells subjected to hypoxia/reoxygenation (H/R). Importantly, in an ex vivo Langendorff rat heart model, 11d administration at reperfusion markedly improved cardiac functional recovery, reduced infarct-associated cell death and preserved myocardial architecture. Collectively, these results identify 11d as a promising lead compound for cardioprotection and support targeting the ATP synthase c subunit as a viable therapeutic strategy against reperfusion injury.

## Linked entities

- **Species:** Homo sapiens (taxon 9606), Rattus norvegicus (taxon 10116)

## Full-text entities

- **Genes:** KNG1 (kininogen 1) [NCBI Gene 3827] {aka BDK, BK, HAE6, HK, HMWK, KNG}, RIPK1 (receptor interacting serine/threonine kinase 1) [NCBI Gene 8737] {aka AIEFL, IMD57, RIP, RIP-1, RIP1}, ATP5MC2 (ATP synthase membrane subunit c locus 2) [NCBI Gene 517] {aka ATP5A, ATP5G2}, DNTT (DNA nucleotidylexotransferase) [NCBI Gene 1791] {aka TDT}, COL11A2 (collagen type XI alpha 2 chain) [NCBI Gene 1302] {aka DFNA13, DFNB53, FBCG2, HKE5, OSMEDA, OSMEDB}, Ptpn1 (protein tyrosine phosphatase, non-receptor type 1) [NCBI Gene 24697] {aka Ptp, Ptp1b}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, PPIF (peptidylprolyl isomerase F) [NCBI Gene 10105] {aka CYP3, CyP-M, Cyp-D, CypD}, C12orf57 (chromosome 12 open reading frame 57) [NCBI Gene 113246] {aka C10, GRCC10}, PTPRU (protein tyrosine phosphatase receptor type U) [NCBI Gene 10076] {aka FMI, PCP-2, PTP, PTP-J, PTP-PI, PTP-RO}, Reg2 (regenerating islet-derived 2) [NCBI Gene 19693] {aka PSP, PTP, REG-2}, Mcu (mitochondrial calcium uniporter) [NCBI Gene 215999] {aka 2010012O16Rik, C10orf42, Ccdc109a, D130073L02Rik, Gm64}
- **Diseases:** I/R (MESH:D015427), cardiomyocyte death (MESH:D003643), hypertension (MESH:D006973), CRC (MESH:D016055), mitochondrial (MESH:D028361), CVDs (MESH:D002318), MI (MESH:D009203), /R (MESH:C580424), ischemic hearts (MESH:D017202), endothelial dysfunction (MESH:D014652), ischemic (MESH:D002545), toxicity (MESH:D064420), hypoxic (MESH:D002534), infarct (MESH:D007238), myocardial damage (MESH:D009202), cardiac reperfusion injury (MESH:D015428), HCM (MESH:D006331), ischemia (MESH:D007511), H (MESH:D000848), necrosis (MESH:D009336), H/R (MESH:D000860)
- **Chemicals:** 3,4-dihydronaphthalen-1(2H)-one (MESH:C568112), benzyl bromide (MESH:C038682), silica gel (MESH:D058428), succinate (MESH:D019802), superoxide (MESH:D013481), 2H (MESH:D003903), 4-methylcyclohexan-1-one (-), MgCl2 (MESH:D015636), Oligomycin A (MESH:C031004), PI (MESH:D011419), ethyl acetate (MESH:C007650), NaHCO3 (MESH:D017693), calcein acetoxymethyl ester (MESH:C085925), NaCl (MESH:D012965), Pyrrolidine (MESH:C032519), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (MESH:C028694), coelenterazine (MESH:C017144), 3H (MESH:D014316), methanol (MESH:D000432), His (MESH:D006632), Crystal violet (MESH:D005840), tetrahydrothiophene (MESH:C121030), K+ (MESH:D011188), proton (MESH:D011522), PS (MESH:D010758), silica (MESH:D012822), 1,4-dithiane,2,5-diol (MESH:C000606160), formic acid (MESH:C030544), HEPES (MESH:D006531), Hematoxylin (MESH:D006416), Oxygen (MESH:D010100), Ionomycin (MESH:D015759), CsA (MESH:D016572), TRIS (MESH:D014325), cyclohexanone (MESH:C036468), sodium sulphate (MESH:C012036), Amino acids (MESH:D000596), MgSO4 (MESH:D008278), F12 (MESH:C007782), lactam (MESH:D007769), N2 (MESH:D009584), ureas (MESH:D014508), EDTA (MESH:D004492), Hoechst 33342 (MESH:C017807), TFA (MESH:D014269), Cl- (MESH:D002713), Triton X-100 (MESH:D017830), TEA (MESH:C016162), CH3CN (MESH:C032159), aldol (MESH:C116609), fatty acid (MESH:D005227), carbon (MESH:D002244), 11c (MESH:C000615233), ATP (MESH:D000255), H2O (MESH:D014867), piperidine (MESH:C032727), amide (MESH:D000577), NaH (MESH:C025451), fluorine (MESH:D005461), l-glutamine (MESH:D005973)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090], Sus scrofa domesticus (domestic pig, subspecies) [taxon 9825], Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Sus scrofa (pig, species) [taxon 9823]
- **Cell lines:** AC16 — Homo sapiens (Human), Transformed cell line (CVCL_HA69), pAECs — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_U411)

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12968426/full.md

## References

88 references — full list in the complete paper: https://tomesphere.com/paper/PMC12968426/full.md

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Source: https://tomesphere.com/paper/PMC12968426