# Engineering resilient roses: molecular insights into biotic and abiotic stress adaptation

**Authors:** Hammad Hussain, Hamza Sohail, Edvinas Misiukevičius, Kaikai Zhu, Yazheng Cao, Yuqing Gu, Qianxiang Zhang, Yong Xu, Mengjuan Bai, Jianwen Wang, Guo Wei, Liguo Feng

PMC · DOI: 10.1093/hr/uhaf332 · Horticulture Research · 2025-12-03

## TL;DR

This paper reviews how roses adapt to environmental and pathogen stresses at the molecular level and suggests ways to breed more resilient roses.

## Contribution

The paper provides a comprehensive synthesis of recent molecular insights and biotechnological strategies for improving rose resilience.

## Key findings

- Transcription factors like WRKY, NAC, MYB, and AP2/ERF regulate stress-responsive gene expression in roses.
- Epigenetic mechanisms and post-translational modifications contribute to stress memory and resilience in roses.
- CRISPR and other biotechnological tools offer promising methods for breeding stress-tolerant rose cultivars.

## Abstract

Rose (Rosa spp.) is a high-value ornamental plant cultivated worldwide for its aesthetic and commercial importance. However, rose production is frequently challenged by a wide range of biotic and abiotic stresses that impair growth, development, and floral quality, ultimately reducing the yield and economic returns. Recent advances have clarified the molecular pathways that govern stress responses in roses, with particular emphasis on transcriptional regulation, post-translational protein modifications, and epigenetic control. Transcription factors such as the WRKY, NAC, MYB, and AP2/ERF families regulate stress-responsive gene expression. Post-translational modifications, including phosphorylation and ubiquitination, together with epigenetic mechanisms such as DNA methylation and chromatin remodeling, establish molecular ‘stress memory’ and resilience. In response to biotic stress, roses defend against major pathogens, including black spot (Marssonina rosae), gray mold (Botrytis cinerea), and powdery mildew (Podosphaera pannosa) through integrated hormonal signaling and transcriptional regulation. Aphid herbivory triggers calcium fluxes, phosphorylation cascades, and the synthesis of secondary metabolites that strengthen defense. Emerging biotechnological tools, particularly genome editing using clustered regularly interspaced short palindromic repeats/Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-associated protein 9, marker-assisted selection, and virus-induced gene silencing, provide promising approaches for breeding rose cultivars with improved tolerance to environmental and pathogenic stresses. This review synthesizes recent advances in understanding the molecular mechanisms underlying both biotic and abiotic stress adaptation in roses and outlines strategies for developing resilient cultivars capable of maintaining productivity and ornamental value under adverse conditions.

## Linked entities

- **Genes:** WRKY (probable WRKY transcription factor 33) [NCBI Gene 103865671], XK (X-linked Kx blood group antigen, Kell and VPS13A binding protein) [NCBI Gene 7504], MYB (MYB proto-oncogene, transcription factor) [NCBI Gene 4602], AP2/ERF (ethylene-responsive transcription factor ERF113) [NCBI Gene 105647302]
- **Species:** Botrytis cinerea (taxon 40559), Podosphaera pannosa (taxon 62728)

## Full-text entities

- **Genes:** ABI2 (Protein phosphatase 2C family protein) [NCBI Gene 835809] {aka ABA INSENSITIVE 2, AtABI2, MHM17.19, MHM17_19, PROTEIN PHOSPHATASE 2C}, ABF4 (ABRE binding factor 4) [NCBI Gene 821463] {aka ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4, AREB2, AtAREB2, MVI11.7}, CIPK3 (CBL-interacting protein kinase 3) [NCBI Gene 817240] {aka CBL-INTERACTING PROTEIN KINASE 3, CBL-interacting protein kinase 3, SNF1-RELATED PROTEIN KINASE 3.17, SnRK3.17, T20P8.3, T20P8_3}, NHX1 (Na+/H+ exchanger 1) [NCBI Gene 832773] {aka AT-NHX1, ATNHX, ATNHX1, NA(+)/H(+) ANTIPORTER, Na+/H+ exchanger 1, T21B4.60}
- **Diseases:** VIGS (MESH:D014777), M. rosae infection (MESH:D007239), dehydration (MESH:D003681), ion toxicity (MESH:D064420), vein blackening (MESH:D000071078), fungal (MESH:D009181), necrosis (MESH:D009336), cognitive decline (MESH:D003072), infectious diseases (MESH:D003141), degenerative diseases (MESH:D019636), Gray mold (MESH:D055652), diabetes (MESH:D003920), water (MESH:D000069578), Black spot disease (MESH:D055008), cancer (MESH:D009369), crown gall (MESH:D005706), black spot (MESH:D008796), black (MESH:D007898), hypoxia (MESH:D000860)
- **Chemicals:** 6 mA (-), H2O2 (MESH:D006861), raffinose (MESH:D011887), oxalic acid (MESH:D019815), K+ (MESH:D011188), Na+ (MESH:D012964), PA (MESH:C013221), acyl-CoA. (MESH:D000214), PAs (MESH:D044945), amino acids (MESH:D000596), Cl- (MESH:D002713), starch (MESH:D013213), tannins (MESH:D013634), carbohydrate (MESH:D002241), MDA (MESH:D008315), N6-methyladenine (MESH:C005955), polyphenols (MESH:D059808), glutathione (MESH:D005978), ion (MESH:D007477), cytokinin (MESH:D003583), VLCFAs (MESH:C017364), suberin (MESH:C065875), lipid (MESH:D008055), sucrose (MESH:D013395), sesquiterpenoid (MESH:D012717), callose (MESH:C048306), membrane lipid (MESH:D008563), anthocyanin (MESH:D000872), IAA (MESH:C030737), H+ (MESH:D006859), JA (MESH:C011006), flavonoid (MESH:D005419), auxin (MESH:D007210), Ca (MESH:D002118), ROS (MESH:D017382), ABA (MESH:D000040), proline (MESH:D011392), NaCl (MESH:D012965), GA (MESH:C007842), sugar (MESH:D000073893), Salt (MESH:D012492), SA (MESH:D020156), polysaccharides (MESH:D011134), ET (MESH:C036216), wax (MESH:D014885), chitin (MESH:D002686), chlorophyll (MESH:D002734), C (MESH:D002244), 5-methylcytosine (MESH:D044503), water (MESH:D014867), Tyr (MESH:D014443), carotenoid (MESH:D002338), phenolic acids (MESH:C017616), terpenoids (MESH:D013729), BR (MESH:D060406), glucosinolate (MESH:D005961), alkaloids (MESH:D000470), VOC (MESH:D055549), chloride (MESH:D002712)
- **Species:** Rosa beggeriana (species) [taxon 267232], Ipomoea batatas (batate, species) [taxon 4120], Rosa multiflora (Japanese rose, species) [taxon 74647], Marssonina rosae [taxon 324778], Rosa chinensis (China rose, species) [taxon 74649], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Alternaria alternata (species) [taxon 5599], Medicago truncatula (barrel medic, species) [taxon 3880], Aphidomorpha (aphids, infraorder) [taxon 33380], Elsinoe rosarum (species) [taxon 1803861], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Botrytis cinerea (gray fruit mold, species) [taxon 40559], Peronospora sparsa (species) [taxon 70743], Agrobacterium tumefaciens (species) [taxon 358], Rosa rugosa (Japanese rose, species) [taxon 74645], Diplocarpon rosae (rose black spot fungus, species) [taxon 946125], Pyricularia grisea (species) [taxon 148305], Thrips (genus) [taxon 45057], Sitobion rosivorum (species) [taxon 1248173], Podosphaera pannosa (species) [taxon 62728], Rosa lucieae (memorial rose, species) [taxon 74648], Rosa (genus) [taxon 3764], Rosa roxburghii (burr rose, species) [taxon 74654], Rice black streaked dwarf virus (no rank) [taxon 10990], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Rosa x damascena (damask rose, species) [taxon 3765], Pythium graminicola (species) [taxon 82937], Rosa persica (species) [taxon 74628], Emaravirus rosae (species) [taxon 1980433], Nicotiana tabacum (American tobacco, species) [taxon 4097], Rosa hybrid cultivar (species) [taxon 128735], Sclerotinia sclerotiorum (species) [taxon 5180]
- **Mutations:** A-1 to A, cytosine residues in CG, 64 serine (Ser), 20 threonine (Thr)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12968139/full.md

## References

205 references — full list in the complete paper: https://tomesphere.com/paper/PMC12968139/full.md

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Source: https://tomesphere.com/paper/PMC12968139