# Development of lysine-branched dendrimeric antimicrobial peptides targeting ESKAPE pathogens: broad-spectrum activity, biofilm eradication, and endotoxin neutralization

**Authors:** S. Dinesh Kumar, Eun Young Kim, Naveen Kumar Radhakrishnan, Byambasuren Ganbaatar, Chul Won Lee, Sungtae Yang, Song Yub Shin

PMC · DOI: 10.3389/fmicb.2025.1702629 · Frontiers in Microbiology · 2026-02-23

## TL;DR

Scientists designed new antimicrobial peptides that effectively fight drug-resistant bacteria, break down biofilms, and reduce inflammation, offering a promising treatment for infections and sepsis.

## Contribution

The study introduces lysine-branched dendrimeric peptides with broad-spectrum antimicrobial activity and endotoxin neutralization capabilities.

## Key findings

- Dimeric peptides showed optimal broad-spectrum antibacterial activity against multidrug-resistant ESKAPE pathogens.
- D-enantiomeric dimers resisted proteolytic degradation and maintained activity in physiological conditions.
- The peptides inhibited biofilms and neutralized endotoxins while reducing inflammatory responses.

## Abstract

Antimicrobial resistance (AMR) represents a pressing global health challenge, driving the urgent need for novel therapeutic agents with improved stability and selectivity. In this study, we present the rational design and synthesis of lysine-branched dendrimeric antimicrobial peptides (AMPs) based on short arginine/tryptophan-rich motifs (Du-6 and Lf-6), yielding dimeric and tetrameric architectures. Physicochemical analyses revealed a systematic increase in net charge and hydrophobicity with higher degrees of branching. Comparative biological evaluations demonstrated that dimeric peptides (di-Du-6 and di-Lf-6) achieved optimal broad-spectrum antibacterial activity against both Gram-positive and Gram-negative bacteria, including multidrug-resistant ESKAPE pathogens. These dimers maintained low hemolytic activity and exhibited therapeutic indices of up to 40. In contrast, despite their elevated charge density and tryptophan content, tetrameric peptides showed increased cytotoxicity, likely due to deeper membrane penetration into eukaryotic cells, thereby compromising selectivity. To overcome proteolytic degradation, D-enantiomeric dimers [(di-Du-6)
D
 and (di-Lf-6)
D
] were synthesized. These retained potent antimicrobial efficacy, demonstrated complete resistance to trypsin digestion, and remained active under physiologically relevant conditions, including the presence of salts and serum. Beyond their antibacterial effects, the dimeric peptides effectively inhibited and eradicated biofilms formed by multidrug-resistant Pseudomonas aeruginosa, exhibited synergistic interactions with conventional antibiotics, and attenuated inflammatory responses by suppressing the production and expression of pro-inflammatory cytokines in LPS-stimulated macrophages. Furthermore, they neutralized endotoxins through direct binding and disaggregation of LPS aggregates. Collectively, these results establish dimeric peptides as multifunctional anti-infective agents, combining broad-spectrum antibacterial, antibiofilm, and anti-inflammatory activities. The enhanced proteolytic stability and selectivity of D-form dimers underscore their promise as next-generation therapeutics for combating multidrug-resistant infections and sepsis-associated inflammation.

## Linked entities

- **Species:** Pseudomonas aeruginosa (taxon 287)

## Full-text entities

- **Genes:** Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Ccl2 (C-C motif chemokine ligand 2) [NCBI Gene 20296] {aka HC11, JE, MCAF, MCP-1, MCP1, SMC-CF}, Lbp (lipopolysaccharide binding protein) [NCBI Gene 16803] {aka Bpifd2, Ly88}, Tlr4 (toll-like receptor 4) [NCBI Gene 21898] {aka Lps, Ly87, Ran/M1, Rasl2-8}, LTF (lactotransferrin) [NCBI Gene 280846] {aka Lf}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Mill2 (MHC I like leukocyte 2) [NCBI Gene 243864] {aka Micb}, CAMP (cathelicidin antimicrobial peptide) [NCBI Gene 820] {aka CAP-18, CAP18, CRAMP, FALL-39, FALL39, HSD26}, Cd14 (CD14 antigen) [NCBI Gene 12475], Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}
- **Diseases:** inflammation (MESH:D007249), deaths (MESH:D003643), MDRPA (MESH:D011552), MDR (MESH:D018088), CL (MESH:D002971), infections (MESH:D007239), fatalities (MESH:C565541), Toxicity (MESH:D064420), PMB (MESH:D006509), hemolysis (MESH:D006461), sepsis (MESH:D018805)
- **Chemicals:** PI (MESH:D011419), D- (MESH:D003903), (di-Lf-6) D (-), MBHA (MESH:C070954), acids (MESH:D000143), salt (MESH:D012492), AMP (MESH:D000089882), K+ (MESH:D011188), Na+ (MESH:D012964), SYTO-9 (MESH:C103389), 9-fluorenylmethoxycarbonyl (MESH:C496789), MTT (MESH:C070243), L-amino acids (MESH:D000596), CH3CN (MESH:C032159), 1-N-phenylnaphthylamine (MESH:C005444), diSC3-5 (MESH:C012944), CIP (MESH:D002939), TFA (MESH:D014269), PC (MESH:C053518), arginine (MESH:D001120), phospholipid (MESH:D010743), BC (MESH:C488469), H2O (MESH:D014867), OXA (MESH:D010068), LPS (MESH:D008070), peptides (MESH:D010455), lysine (MESH:D008239), Trp (MESH:D014364), Acrylamide (MESH:D020106), CPN (MESH:D002701), Lipid A (MESH:D008050), cadaverine (MESH:D002103)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Staphylococcus aureus (species) [taxon 1280], Mus musculus (house mouse, species) [taxon 10090], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Pseudomonas aeruginosa (species) [taxon 287], Klebsiella pneumoniae (species) [taxon 573], Homo sapiens (human, species) [taxon 9606], Ovis aries (domestic sheep, species) [taxon 9940], Bos taurus (bovine, species) [taxon 9913], Acinetobacter baumannii (species) [taxon 470], Enterococcus faecium (species) [taxon 1352], Enterobacter (genus) [taxon 547]
- **Cell lines:** MDRPA — Homo sapiens (Human), Transformed cell line (CVCL_4T77), MDRAB 329-53 — Homo sapiens (Human), Malignant neoplasm of multiple primary sites, Transformed cell line (CVCL_EQ14), KCTC 1621 — Homo sapiens (Human), Acute intermittent porphyria, Finite cell line (CVCL_4J32), RAW 264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), (321-16 — Homo sapiens (Human), Finite cell line (CVCL_7279), KCTC 1682 — Rattus norvegicus (Rat), Rat hepatocellular carcinoma, Cancer cell line (CVCL_F665)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12967992/full.md

## References

67 references — full list in the complete paper: https://tomesphere.com/paper/PMC12967992/full.md

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Source: https://tomesphere.com/paper/PMC12967992