# Metabolic analysis of MYB30 that regulates iron deficiency stress in Arabidopsis

**Authors:** Qianyuan Gong

PMC · DOI: 10.3389/fpls.2026.1756499 · Frontiers in Plant Science · 2026-02-23

## TL;DR

This study identifies MYB30 as a key transcription factor that helps plants cope with iron deficiency stress by regulating metabolic pathways and antioxidant activity.

## Contribution

The study reveals MYB30 as a novel positive regulator of plant response to iron deficiency through metabolic and phenotypic analyses.

## Key findings

- MYB30 overexpression enhances plant tolerance to iron deficiency, while its absence increases sensitivity.
- Metabolomic analysis shows 22 altered pathways in myb30 plants under iron deficiency, affecting antioxidant activity and detoxification.
- MYB30 reduces reactive oxygen species accumulation by activating genes and boosting antioxidant enzyme activity.

## Abstract

Iron is an essential microelement for animals, humans, and plants. Notably, approximately one-third of the world’s soils are alkaline, leading to iron deficiency. Therefore, understanding the mechanism of iron absorption and transport in plants is crucial for improving iron bioavailability in crops.

In this research, reverse genetics was used to identify the transcription factor MYB30 as a positive regulator of the plant response to iron deficiency.

Phenotype analysis demonstrated that MYB30 mutant plants were sensitive to iron deficiency, exhibiting reduced root length, lower chlorophyll content, and elevated lipid peroxidation, whereas MYB30 overexpression lines showed enhanced tolerance. Metabolomic analysis of myb30 plant roots by mass spectrometry indicated decreased antioxidant activity and detoxification capacity under iron-deficient conditions. Interestingly, 22 metabolic pathways were altered in the myb30 plant under iron deficiency. This metabolic reprogramming likely compromises plant growth. Furthermore, MYB30 reduced reactive oxygen species accumulation under iron deficiency stress by activating related genes and enhancing antioxidant enzyme activity. In summary, metabolite analysis provides detailed molecular insights into plant iron deficiency stress and supports molecular genetic breeding efforts to improve mineral nutrition in crops.

## Linked entities

- **Genes:** MYB30 (myb domain protein 30) [NCBI Gene 822525]
- **Species:** Arabidopsis (taxon 3701)

## Full-text entities

- **Genes:** ACT2 (actin 2) [NCBI Gene 821411] {aka DEFORMED ROOT HAIRS 1, DER1, ENHANCER OF LRX1 2, ENL2, FIZ2, FRIZZY AND KINKED SHOOTS 2}, ZIF1 (zinc induced facilitator 1) [NCBI Gene 831219] {aka MSH12.21, MSH12_21, zinc induced facilitator 1}, CAT2 (catalase 2) [NCBI Gene 829661] {aka CATALASE, T12J5.2, catalase 2}, PYE (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) [NCBI Gene 823918] {aka POPEYE}, NAS4 (nicotianamine synthase 4) [NCBI Gene 842096] {aka ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, ATNAS4, F13N6.10, F13N6_10, nicotianamine synthase 4}, MYB30 (myb domain protein 30) [NCBI Gene 822525] {aka ATMYB30, myb domain protein 30}, FRO2 (ferric reduction oxidase 2) [NCBI Gene 839411] {aka ATFRO2, F22L4.12, F22L4_12, FERRIC CHELATE REDUCTASE DEFECTIVE 1, FERRIC REDUCTION OXIDASE 2, FRD1}, MYB10 (myb domain protein 10) [NCBI Gene 820464] {aka AtMYB10, myb domain protein 10}, MYB72 (myb domain protein 72) [NCBI Gene 842069] {aka ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, ATMYB72, F14G9.22, myb domain protein 72}, MYB4 (myb domain protein 4) [NCBI Gene 830018] {aka ATMYB4, T9A14.11, myb domain protein 4}, IRT1 (iron-regulated transporter 1) [NCBI Gene 827713] {aka ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, ATIRT1, T16H5.50, T16H5_50, iron-regulated transporter 1}, HOS10 (high response to osmotic stress 10) [NCBI Gene 840446] {aka MYB8, high response to osmotic stress 10}, AT5G40153 (peroxidase) [NCBI Gene 28721236], WRKY46 (WRKY DNA-binding protein 46) [NCBI Gene 819248] {aka ATWRKY46, F11C10.9, WRKY DNA-BINDING PROTEIN 46, WRKY DNA-binding protein 46}
- **Diseases:** Iron deficiency (MESH:D000090463)
- **Chemicals:** 2-hydroxy cinnamic acid (MESH:C085894), purine (MESH:C030985), Cysteine (MESH:D003545), lipid (MESH:D008055), sucrose (MESH:D013395), glutathione (MESH:D005978), cepharanthine (MESH:C006947), ROS (MESH:D017382), doxylamine succinate (MESH:C035385), diterpenoid (MESH:D004224), HNO3 (MESH:D017942), PVDF (MESH:C024865), Tryptophan (MESH:D014364), 3,3'-diaminobenzidine (MESH:D015100), aminoacyl-tRNA (MESH:D012346), BC3595 (-), H2O2 (MESH:D006861), MDA (MESH:D008315), arginine (MESH:D001120), carbohydrate (MESH:D002241), acetone (MESH:D000096), methyl jasmonate (MESH:C072239), 4-nitrophenol (MESH:C024836), aspartate (MESH:D001224), cinnamic acid (MESH:C029010), TRIzol (MESH:C411644), Fe (MESH:D007501), Nitrophenols (MESH:D009596), alpha-linolenic acid (MESH:D017962), water (MESH:D014867), pyrimidine (MESH:C030986), ethanol (MESH:D000431), glutamate (MESH:D018698), SDS (MESH:D012967), alkaloid (MESH:D000470), glycerophospholipid (MESH:D020404), proline (MESH:D011392), alanine (MESH:D000409), Chlorophyll (MESH:D002734), nitrogen (MESH:D009584)
- **Species:** Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Homo sapiens (human, species) [taxon 9606], Malus halliana (species) [taxon 106554]
- **Cell lines:** Col-0 — Homo sapiens (Human), Familial hypertrophic cardiomyopathy type 26, Induced pluripotent stem cell (CVCL_A6XE), EHA105 — Mus musculus (Mouse), Hybridoma (CVCL_B0LM)

## Full text

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## Figures

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## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC12967980/full.md

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Source: https://tomesphere.com/paper/PMC12967980