# Emerging role of epigenetic mechanisms in glaucoma and their translational potential

**Authors:** Altaf A. Kondkar, Tahira Sultan, Taif A. Azad, Saleh A. Al-Obeidan

PMC · DOI: 10.3389/fgene.2026.1781271 · Frontiers in Genetics · 2026-02-23

## TL;DR

This paper reviews how epigenetic changes contribute to glaucoma and could lead to new diagnostic and treatment approaches.

## Contribution

The paper highlights novel epigenetic mechanisms in glaucoma pathogenesis and their potential for translational applications.

## Key findings

- Aberrant DNA methylation and histone modifications contribute to glaucoma progression.
- Epigenetic clocks identify glaucoma as an accelerated aging process.
- Epigenetic changes are reversible and could restore visual function in animal models.

## Abstract

Glaucoma, a leading cause of irreversible blindness, is a complex polygenic disease where significant clinical and genetic heterogeneity do not explain all glaucoma cases, highlighting the need for a deeper understanding of molecular mechanisms like epigenetics. This review examines the emerging role of key epigenetic mechanisms, specifically DNA methylation, histone modifications, and non-coding RNAs in glaucoma pathogenesis and their potential as biomarkers and therapeutic targets. We discuss how aberrant DNA methylation (e.g., GDF7 hypomethylation/CDKN2B hypermethylation) promotes trabecular meshwork fibrosis and increases optic nerve vulnerability, contributing to disease development and/or progression. The METTL23 histone methylation linked to retinal ganglion cell death at normal eye pressure, and disease-specific microRNA profiles further support the role of epigenetic involvement in glaucoma. The proof-of-concept studies of GDF7 neutralization in primate models and the OSK-factor reprogramming in aged and glaucoma mice models, show that epigenetic changes are reversible and can restore visual functions. DNA methylation-based epigenetic clocks identify glaucoma as an accelerated molecular aging process. Although promising, the current evidences are largely preclinical and long-term human data are still lacking. Nonetheless, the inherent reversible nature of epigenetics offers significant translational potential. Methylation, epigenetic clocks, and circulating microRNA profiles could enable early, non-invasive biomarkers for diagnosis and prognosis. Future efforts are needed to validate biomarkers in large cohorts and develop targeted epigenetic therapies. In conclusion, epigenetics is redefining our current understanding of glaucoma from a pressure-based disease to a modifiable link between genes and environment paving the way for personalized care for vision preservation beyond pressure-lowering treatments.

## Linked entities

- **Genes:** GDF7 (growth differentiation factor 7) [NCBI Gene 151449], CDKN2B (cyclin dependent kinase inhibitor 2B) [NCBI Gene 1030], METTL23 (methyltransferase 23, arginine) [NCBI Gene 124512]
- **Diseases:** glaucoma (MONDO:0005041)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Mir182 (microRNA 182) [NCBI Gene 387177] {aka Mirn182, mir-182, mmu-mir-182}, Tgfb2 (transforming growth factor, beta 2) [NCBI Gene 21808] {aka Tgf-beta2, Tgfb-2}, DAXX (death domain associated protein) [NCBI Gene 1616] {aka BING2, DAP6, EAP1}, GDF7 (growth differentiation factor 7) [NCBI Gene 151449] {aka BMP12}, MIR3159 (microRNA 3159) [NCBI Gene 100423016], Ctnnb1 (catenin beta 1) [NCBI Gene 12387] {aka Bfc, Catnb, Mesc}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, MIR1260B (microRNA 1260b) [NCBI Gene 100422991] {aka mir-1260b}, LOXL1 (lysyl oxidase like 1) [NCBI Gene 4016] {aka LOL, LOXL}, H19 (H19 imprinted maternally expressed transcript) [NCBI Gene 283120] {aka ASM, ASM1, BWS, D11S813E, GMRSP, LINC00008}, YTHDC2 (YTH N6-methyladenosine RNA binding protein C2) [NCBI Gene 64848] {aka CAHL, hYTHDC2}, Mir18 (microRNA 18) [NCBI Gene 387135] {aka Mirn18, mir-18a, mmu-mir-18, mmu-mir-18a}, Sox2 (SRY (sex determining region Y)-box 2) [NCBI Gene 20674] {aka Sox-2, lcc, ysb}, Mir27a (microRNA 27a) [NCBI Gene 387220] {aka Mirn27a, mir-27a, mmu-mir-27a}, CYP1B1 (cytochrome P450 family 1 subfamily B member 1) [NCBI Gene 1545] {aka ASGD6, CP1B, CYPIB1, GLC3A, P4501B1}, Mir200c (microRNA 200c) [NCBI Gene 723944] {aka Mirn200c, mir-200c}, METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339] {aka IME4, M6A, MT-A70, Spo8, hMETTL3}, CLU (clusterin) [NCBI Gene 1191] {aka AAG4, APO-J, APOJ, CLI, CLU1, CLU2}, Mir200a (microRNA 200a) [NCBI Gene 387242] {aka Mirn200a, mir-200a}, CDKN2B (cyclin dependent kinase inhibitor 2B) [NCBI Gene 1030] {aka CDK4I, INK4B, MTS2, P15, TP15, p15INK4b}, ZRANB1 (zinc finger RANBP2-type containing 1) [NCBI Gene 54764] {aka TRABID}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, METTL23 (methyltransferase 23, arginine) [NCBI Gene 124512] {aka C17orf95, MRT44}, TGFBR3 (transforming growth factor beta receptor 3) [NCBI Gene 7049] {aka BGCAN, betaglycan}, THBS1 (thrombospondin 1) [NCBI Gene 7057] {aka THBS, THBS-1, TSP, TSP-1, TSP1}, MALAT1 (metastasis associated lung adenocarcinoma transcript 1) [NCBI Gene 378938] {aka HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, miPEP-52}, Klf4 (Kruppel-like transcription factor 4 (gut)) [NCBI Gene 16600] {aka EZF, Gklf, Zie}, Tet2 (tet methylcytosine dioxygenase 2) [NCBI Gene 214133] {aka Ayu17-449, E130014J05Rik, mKIAA1546}, MIR637 (microRNA 637) [NCBI Gene 693222] {aka MIRN637, hsa-mir-637}, FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068] {aka ALKBH9, BMIQ14, GDFD, IFEX9}, YTHDF1 (YTH N6-methyladenosine RNA binding protein F1) [NCBI Gene 54915] {aka C20orf21, DF1}, Mir100 (microRNA 100) [NCBI Gene 723892] {aka Mirn100, mir-100, mmu-mir-100}, LINC00028 (long intergenic non-protein coding RNA 28) [NCBI Gene 140875] {aka C20orf93, NCRNA00028, dJ1093G12.6}, CDKN2B-AS1 (CDKN2B and CDKN2A antisense cis and trans regulatory RNA 1) [NCBI Gene 100048912] {aka 66CTG, ANRIL, CDKN2B-AS, CDKN2BAS, NCRNA00089, PCAT12}, FOXC1 (forkhead box C1) [NCBI Gene 2296] {aka ARA, ASGD3, FKHL7, FREAC-3, FREAC3, IGDA}, EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, TNXB (tenascin XB) [NCBI Gene 7148] {aka EDS3, EDSCLL, EDSCLL1, HXBL, TENX, TN-X}, PAX6 (paired box 6) [NCBI Gene 5080] {aka AN, AN1, AN2, ASGD5, D11S812E, FVH1}, MYOC (myocilin) [NCBI Gene 4653] {aka GLC1A, GPOA, JOAG, JOAG1, TIGR}, DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788] {aka DNMT3A2, HESJAS, M.HsaIIIA, TBRS}, Pou5f1 (POU domain, class 5, transcription factor 1) [NCBI Gene 18999] {aka NF-A3, Oct-3, Oct-3/4, Oct-4, Oct3, Oct3/4}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, MIR217 (microRNA 217) [NCBI Gene 406999] {aka MIRN217, mir-217}, Mir96 (microRNA 96) [NCBI Gene 723886] {aka Mirn96, mir-96, mmu-mir-96}, PITX2 (paired like homeodomain 2) [NCBI Gene 5308] {aka ARP1, ASGD4, Brx1, IDG2, IGDS, IGDS2}, RUNX2 (RUNX family transcription factor 2) [NCBI Gene 860] {aka AML3, CBF-alpha-1, CBFA1, CCD, CCD1, CLCD}, TBX3 (T-box transcription factor 3) [NCBI Gene 6926] {aka TBX3-ISO, UMS, XHL}, Tet1 (tet methylcytosine dioxygenase 1) [NCBI Gene 52463] {aka 2510010B09Rik, Cxxc6, D10Ertd17e, LCX, mKIAA1676}
- **Diseases:** vision loss (MESH:D014786), pressure disorder (MESH:D003668), fibrosis (MESH:D005355), optic neuropathies (MESH:D009901), NTG (MESH:D057066), inflammation (MESH:D007249), glaucomatous neurodegeneration (MESH:D019636), damage to the optic nerve (MESH:D020221), neuroinflammation (MESH:D000090862), glaucomatous eyes (MESH:D005134), retinal degeneration (MESH:D012162), pseudoexfoliation glaucoma (MESH:D017889), RGC (MESH:D012173), Glaucoma (MESH:D005901), TM (MESH:D000236), obesity (MESH:D009765), ocular hypertension (MESH:D009798), glaucomatous degeneration (MESH:D009410), blindness (MESH:D001766), fat mass (MESH:C536030), POAG (MESH:D005902)
- **Chemicals:** 5-AC (MESH:C039854), N6-methyladenosine (MESH:C010223), H3R17 (-), DEX (MESH:D003907), 5-aza-2'-deoxycytidine (MESH:D000077209)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** c.A23G, AUC of 0

## Full text

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## References

93 references — full list in the complete paper: https://tomesphere.com/paper/PMC12967979/full.md

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Source: https://tomesphere.com/paper/PMC12967979