# Fabrication of a 3D nano-bienzyme cascade reactor based on a Dps protein scaffold for chiral amine synthesis

**Authors:** Yuan Lu, Ke Wen, Hao Lu, Qian Liu

PMC · DOI: 10.1186/s40643-026-01022-7 · Bioresources and Bioprocessing · 2026-03-07

## TL;DR

Researchers built a 3D nano-enzyme reactor using a Dps protein scaffold, which efficiently and sustainably produces chiral amines with high yield and selectivity.

## Contribution

A novel 3D nano-bienzyme cascade reactor was fabricated using a Dps protein scaffold for efficient chiral amine synthesis.

## Key findings

- The 3DNECR showed significantly higher catalytic efficiency due to optimized spatial organization.
- The reactor maintained over 80% activity after 9 days and high stability across pH and temperature ranges.
- The 3DNECR achieved 99.9% yield and enantioselectivity in synthesizing R-BPA with 92% activity after six reuse cycles.

## Abstract

Based on the self-assembling properties of the SpyCatcher/SpyTag system and the structural advantages of Dps protein, this study successfully constructed a three-dimensional nano-enzyme cascade reactor (3DNECR) through the covalent self-assembly of SpyTag-ADH and SpyCatcher-Dps-ATA117 fusion proteins. The 3DNECR exhibited significantly enhanced catalytic efficiency compared to the two-dimensional control, attributed to optimized spatial organization promoting substrate channeling. The reactor exhibited remarkable storage, pH, and thermal stability. It maintained over 80% activity after 9 days of storage, showed superior pH tolerance across pH 8–10, and remained stable in the temperature range of 4–40 ℃. Molecular docking confirmed strong interfacial binding (− 17.3 kcal/mol) between assembly components and favorable substrate binding (− 7.4 kcal/mol) within the active site. Furthermore, the 3DNECR was applied to the asymmetric synthesis of (R)-1-[3,5-bis(trifluoromethyl)phenyl]ethanamine (R-BPA) in an oil-water biphasic system. Under optimized conditions, the 3DNECR consistently achieved high yields (99.9%) and excellent enantioselectivity (99.9%). The 3DNECR maintained a relative enzyme activity as high as 92% even after six cycles of reuse. This integrated platform showcases substantial potential for efficient and sustainable biocatalytic applications.

The online version contains supplementary material available at 10.1186/s40643-026-01022-7.

## Linked entities

- **Proteins:** PDSS1 (decaprenyl diphosphate synthase subunit 1), AVP (arginine vasopressin)
- **Chemicals:** (R)-1-[3,5-bis(trifluoromethyl)phenyl]ethanamine (PubChem CID 1512511)

## Full-text entities

- **Genes:** PDSS1 (decaprenyl diphosphate synthase subunit 1) [NCBI Gene 23590] {aka COQ1, COQ10D2, COQ1A, DPS, SPS, TPRT}
- **Chemicals:** Dps (MESH:D004176), Hydrogen (MESH:D006859), PLP (MESH:D011732), Lys (MESH:D008239), NADH (MESH:D009243), PB (MESH:D007854), DMSO (MESH:D004121), sulfur (MESH:D013455), ethyl acetate (MESH:C007650), 3DNECR (-), glycerol (MESH:D005990), disulfide (MESH:D004220), sodium phosphate (MESH:C018279), amino acids (MESH:D000596), Asp (MESH:D001224), sodium sulfate (MESH:C012036), toluene (MESH:D014050), Tris (MESH:D014325), dibutyl phthalate (MESH:D003993), oil (MESH:D009821), n-heptane (MESH:C028618), amine (MESH:D000588), trifluoroacetate (MESH:D014269), benzene (MESH:D001554), water (MESH:D014867), SDS (MESH:D012967), HCl (MESH:D006851), NaOH (MESH:D012972), glycine (MESH:D005998), ethanol (MESH:D000431), kanamycin (MESH:D007612), proline (MESH:D011392), gold (MESH:D006046), saline (MESH:D012965), n-hexane (MESH:C026385), phosphate (MESH:D010710), His (MESH:D006639), polyacrylamide (MESH:C016679), agar (MESH:D000362)
- **Species:** Escherichia coli BL21(DE3) (strain) [taxon 469008], Escherichia coli DH5[alpha] (strain) [taxon 668369], Streptococcus pyogenes (species) [taxon 1314], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Cell lines:** BL21(DE3) — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), pET28a — Oryctolagus cuniculus (Rabbit), Transformed cell line (CVCL_6E94)

## Full text

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## Figures

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## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12967773/full.md

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Source: https://tomesphere.com/paper/PMC12967773