# Dysbiosis in the Pathogenesis of Atopic Dermatitis

**Authors:** Hiroki Okamoto, Yuumi Nakamura

PMC · DOI: 10.1111/1346-8138.70191 · The Journal of Dermatology · 2026-02-20

## TL;DR

This paper reviews how imbalances in skin microbes, especially Staphylococcus aureus, contribute to atopic dermatitis and explores new therapies targeting the skin microbiome.

## Contribution

The paper provides a comprehensive review of how microbial dysbiosis, particularly involving Staphylococcus aureus, drives atopic dermatitis and outlines novel microbiome-targeted therapies.

## Key findings

- Cutaneous dysbiosis in atopic dermatitis is marked by reduced microbial diversity and dominance of Staphylococcus aureus.
- Staphylococcus aureus strains with a functional Agr system increase the risk of developing atopic dermatitis in early life.
- New therapies focus on restoring microbial balance through bacteriotherapy and quorum-quenching agents.

## Abstract

Atopic dermatitis (AD) is a chronic inflammatory skin disease characterized by epidermal barrier dysfunction and immune dysregulation. Recent research highlights cutaneous dysbiosis as a critical factor in its pathogenesis. In this review, we summarize the interplay between the skin microbiota and host immunity, contrasting the homeostatic state with the dysbiosis in AD. In healthy skin, resident microbial communities, including coagulase‐negative staphylococci and Cutibacterium acnes, contribute to immune education and pathogen defense. In AD, this equilibrium is disrupted, leading to a state of functional dysbiosis characterized not only by reduced microbial diversity and the predominance of 
Staphylococcus aureus
 but also by the loss of protective commensal functions. The virulence of 
S. aureus
 is pivotal, with its accessory gene regulator (Agr) quorum‐sensing system driving the expression of toxins like δ‐toxin, which exacerbates type 2 inflammation and barrier defects. Crucially, colonization in early life with 
S. aureus
 strains possessing a functional Agr system is strongly associated with an increased risk of subsequent AD development. This understanding has prompted a paradigm shift in therapeutic strategies. Recognizing the limitations of traditional broad‐spectrum antimicrobials, which can worsen dysbiosis, novel approaches now focus on restoring microbial balance. These include bacteriotherapy using beneficial commensal strains to competitively inhibit 
S. aureus
, quorum‐quenching agents, and preventive skincare interventions initiated in infancy to foster a healthy microbiome. A deeper comprehension of these host‐microbe and microbe‐microbe interactions is essential for optimizing these promising microbiome‐targeted therapies for AD.

## Linked entities

- **Diseases:** atopic dermatitis (MONDO:0004980)
- **Species:** Staphylococcus aureus (taxon 1280), Cutibacterium acnes (taxon 1747)

## Full-text entities

- **Genes:** alpha-hemolysin [NCBI Gene 28381283], SspA [NCBI Gene 13875352]
- **Diseases:** sensory dysfunction (MESH:D012678), Dysbiosis (MESH:D064806), water loss (MESH:D000069578), chronic inflammation (MESH:D007249), inflammatory skin disease (MESH:D012871), itch (MESH:D011537), microbial (MESH:D015163), dermatitis (MESH:D003872), immune (MESH:D007154), infection (MESH:D007239), food allergy (MESH:D005512), cytotoxicity (MESH:D064420), eczema (MESH:D004485), immunodeficient (MESH:D007153), acne (MESH:D000152), AD (MESH:D003876), immune dysregulation (OMIM:614878), fungal overgrowth (MESH:D009181), allergic (MESH:D004342), CREST (MESH:D017675)
- **Chemicals:** LTA (MESH:C009900), fengycins (MESH:C049972), AMP (MESH:D000089882), ceramides (MESH:D002518), cholesterol (MESH:D002784), Phenol (MESH:D019800), water (MESH:D014867), free fatty acids (MESH:D005230), sodium hypochlorite (MESH:D012973), fatty acids (MESH:D005227), lugdunin (MESH:C000609985), HE (MESH:D006371), AIPs (-), short-chain fatty acids (MESH:D005232), lipopeptides (MESH:D055666), lipid (MESH:D008055)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Prevotella (genus) [taxon 838], Malassezia globosa (species) [taxon 76773], Staphylococcus hominis (species) [taxon 1290], Haemophilus (genus) [taxon 724], Acinetobacter (genus) [taxon 469], Candida albicans (species) [taxon 5476], Cutibacterium acnes (species) [taxon 1747], Neisseria (genus) [taxon 482], Moraxella (genus) [taxon 475], Flavobacteriales (order) [taxon 200644], Cutibacterium (genus) [taxon 1912216], Staphylococcus aureus (species) [taxon 1280], Staphylococcus epidermidis (species) [taxon 1282], Homo sapiens (human, species) [taxon 9606], Leishmania major (species) [taxon 5664], Corynebacterium (genus) [taxon 1716], Staphylococcus lugdunensis (species) [taxon 28035], Symbiodinium sp. Ha9 (isolate) [taxon 330107], Bacteriophage sp. (species) [taxon 38018], Bacillus (genus) [taxon 55087], gut metagenome (species) [taxon 749906], Micrococcus (genus) [taxon 1269], Streptococcus mitis (species) [taxon 28037]
- **Mutations:** R200Y
- **Cell lines:** ShA9 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_RG56)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12967732/full.md

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12967732/full.md

## References

90 references — full list in the complete paper: https://tomesphere.com/paper/PMC12967732/full.md

---
Source: https://tomesphere.com/paper/PMC12967732