# Study on the Potential Molecular Mechanisms of Sodium Dehydroacetate (Na‐DHA) Interfering With Bone Metabolism and Inducing Osteoporosis Based on Network Toxicology, Molecular Docking, and In Vitro Experimental Validation

**Authors:** Weihong Qian, Qingqing Bao, Xiaoqing Tang, Wuchao Lu, Jiaxin Huang, Jiapeng Bao, Zhihong Yao

PMC · DOI: 10.1002/fsn3.71633 · Food Science & Nutrition · 2026-03-08

## TL;DR

This study investigates how the food additive Na-DHA may cause osteoporosis by disrupting bone metabolism through specific molecular mechanisms.

## Contribution

The study integrates network toxicology, molecular docking, and in vitro experiments to reveal new molecular pathways linking Na-DHA to osteoporosis.

## Key findings

- Na-DHA disrupts bone metabolism by altering lipid metabolism and the balance between osteogenesis and adipogenesis.
- LCMT1, ARHGEF11, and VCAM1 are identified as core molecular targets affected by Na-DHA exposure.
- In vitro experiments show Na-DHA reduces hBMSCs viability and osteogenic differentiation while increasing lipid accumulation.

## Abstract

Sodium Dehydroacetate (Na‐DHA), a widely used food additive, has raised concerns about the chronic health risks associated with long‐term exposure. However, the potential impact of Na‐DHA on bone metabolism, its contribution to osteoporosis risk, and the specific molecular mechanisms remain unclear. This study aims to systematically elucidate the molecular mechanisms through which Na‐DHA induces osteoporosis by integrating network toxicology, molecular docking, and in vitro experiments. Potential targets of Na‐DHA were identified through multi‐database screening. Osteoporosis‐related genes were extracted from the GEO database (GSE156508) and subjected to differential and enrichment analyses. Common targets between Na‐DHA and osteoporosis were identified using a Venn diagram. A protein–protein interaction (PPI) network was constructed using STRING, and core targets were selected through random forest analysis. Molecular docking of core targets with Na‐DHA was performed using AutoDock Vina. Human bone marrow mesenchymal stem cells (hBMSCs) were used as a model to assess cell viability using the CCK‐8 assay, observe osteogenic/adipogenic differentiation phenotypes through Alizarin Red S and Oil Red O staining, and validate the expression of core targets and osteogenic genes by qRT‐PCR and Western blot. Multi‐database screening identified 325 potential Na‐DHA targets and 500 osteoporosis‐related differential genes. Of these, 34 common key targets were identified, which were mainly enriched in pathways related to lipid metabolism, autophagy, and steroid biosynthesis. Random forest analysis identified LCMT1, ARHGEF11, and VCAM1 as core targets, and molecular docking revealed potential binding interactions between Na‐DHA and all three targets. In vitro experiments demonstrated that 10 μM Na‐DHA significantly inhibited hBMSCs viability, reduced calcium deposition in Alizarin Red S staining, increased lipid droplet accumulation in Oil Red O staining, and downregulated the expression of key osteogenic genes (BGLAP, SP7, RUNX2, ALPL). Moreover, Na‐DHA significantly upregulated the mRNA and protein expression of LCMT1 and downregulated the mRNA and protein expression of ARHGEF11 and VCAM1. Na‐DHA may increase osteoporosis risk by upregulating LCMT1, downregulating ARHGEF11 and VCAM1, and disrupting lipid metabolism and the balance between osteogenesis and adipogenesis, ultimately disrupting bone metabolic homeostasis. This study provides scientific evidence for assessing the skeletal health risks of Na‐DHA and exploring potential intervention targets for bone toxicity.

The main workflow and core design concept of the current study.

## Linked entities

- **Genes:** LCMT1 (leucine carboxyl methyltransferase 1) [NCBI Gene 51451], ARHGEF11 (Rho guanine nucleotide exchange factor 11) [NCBI Gene 9826], VCAM1 (vascular cell adhesion molecule 1) [NCBI Gene 7412], BGLAP (bone gamma-carboxyglutamate protein) [NCBI Gene 632], SP7 (Sp7 transcription factor) [NCBI Gene 121340], RUNX2 (RUNX family transcription factor 2) [NCBI Gene 860], ALPL (alkaline phosphatase, biomineralization associated) [NCBI Gene 249]
- **Chemicals:** Sodium Dehydroacetate (PubChem CID 23721629)
- **Diseases:** osteoporosis (MONDO:0005298)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** CD34 (CD34 molecule) [NCBI Gene 947], RHOA (ras homolog family member A) [NCBI Gene 387] {aka ARH12, ARHA, EDFAOB, RHO12, RHOH12}, RUNX2 (RUNX family transcription factor 2) [NCBI Gene 860] {aka AML3, CBF-alpha-1, CBFA1, CCD, CCD1, CLCD}, SP7 (Sp7 transcription factor) [NCBI Gene 121340] {aka OI11, OI12, OSX, osterix}, SEPSECS (Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase) [NCBI Gene 51091] {aka LP, PCH2D, SLA, SLA-p35, SLA/LP, SecS}, CDC42 (cell division cycle 42) [NCBI Gene 998] {aka CDC42Hs, G25K, TKS}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, ALPL (alkaline phosphatase, biomineralization associated) [NCBI Gene 249] {aka AP-TNAP, APTNAP, HOPS, HPPA, HPPC, HPPI}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, ARHGEF11 (Rho guanine nucleotide exchange factor 11) [NCBI Gene 9826] {aka GTRAP48, PDZ-RHOGEF}, SEA (S13 erythroblastosis (avian) oncogene homolog) [NCBI Gene 6395], RAC1 (Rac family small GTPase 1) [NCBI Gene 5879] {aka MIG5, MRD48, Rac-1, TC-25, p21-Rac1}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, CTD (Coats disease) [NCBI Gene 1283], BGLAP (bone gamma-carboxyglutamate protein) [NCBI Gene 632] {aka BGP, OC, OCN}, GRWD1 (glutamate rich WD repeat containing 1) [NCBI Gene 83743] {aka CDW4, DIAR14, GRWD, RRB1, WDR28}, ATG5 (autophagy related 5) [NCBI Gene 9474] {aka APG5, APG5-LIKE, APG5L, ASP, SCAR25, hAPG5}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}, LCMT1 (leucine carboxyl methyltransferase 1) [NCBI Gene 51451] {aka CGI-68, LCMT, PPMT1}, ITGB1 (integrin subunit beta 1) [NCBI Gene 3688] {aka CD29, FNRB, GPIIA, MDF2, MSK12, VLA-BETA}, RHO (rhodopsin) [NCBI Gene 6010] {aka CSNBAD1, OPN2, RP4}, VCAM1 (vascular cell adhesion molecule 1) [NCBI Gene 7412] {aka CD106, INCAM-100}, ACTB (actin beta) [NCBI Gene 60] {aka BKRNS, BNS, BRWS1, CSMH, DDS1, PS1TP5BP1}, CAT (catalase) [NCBI Gene 847], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, PTPA (protein phosphatase 2 phosphatase activator) [NCBI Gene 5524] {aka PARK25, PP2A, PPP2R4, PR53}, PPP2CA (protein phosphatase 2 catalytic subunit alpha) [NCBI Gene 5515] {aka HJS3, NEDLBA, PP2Ac, PP2CA, PP2Calpha, RP-C}, ARHGEF28 (Rho guanine nucleotide exchange factor 28) [NCBI Gene 64283] {aka RGNEF, RIP2, p190RHOGEF}, TDP2 (tyrosyl-DNA phosphodiesterase 2) [NCBI Gene 51567] {aka AD022, EAP2, EAPII, TTRAP, dJ30M3.3, hTDP2}
- **Diseases:** bone fragility (MESH:C536063), metabolic disorders (MESH:D008659), Osteoarthritis (MESH:D010003), reproductive toxicity (MESH:D060737), Bone Metabolism (MESH:D001851), obesity (MESH:D009765), osteoporotic (MESH:D058866), cancer (MESH:D009369), fracture (MESH:D050723), inflammatory (MESH:D007249), hepatic lipid (MESH:D011017), liver and kidney damage (MESH:D056486), estrogen deficiency (MESH:D056828), bone damage (MESH:D001847), cytotoxic (MESH:D064420), Osteoporosis (MESH:D010024), coagulation dysfunction (MESH:D001778), cardiovascular diseases (MESH:D002318)
- **Chemicals:** cholesterol (MESH:D002784), isopropanol (MESH:D019840), SDS (MESH:D012967), ascorbic acid (MESH:D001205), Oil Red O (MESH:C011049), CCK-8 (MESH:D012844), L (MESH:D007930), water (MESH:D014867), Parabens (MESH:D010226), streptomycin (MESH:D013307), lactic acid (MESH:D019344), omega-3 fatty acid (MESH:D015525), oxygen (MESH:D010100), BaP (MESH:D001564), vitamin D (MESH:D014807), Alizarin Red S (MESH:C004468), DHA (MESH:C027493), calcium (MESH:D002118), PBS (MESH:D007854), PVDF (MESH:C024865), hydrogen (MESH:D006859), paraformaldehyde (MESH:C003043), lipid (MESH:D008055), Steroids (MESH:D013256), propionate (MESH:D011422), fatty acid (MESH:D005227), dexamethasone (MESH:D003907), beta-glycerophosphate (MESH:C031463), IBMX (MESH:D015056), penicillin (MESH:D010406), BCA (-), Alizarin Red (MESH:C010078)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Gallus gallus (bantam, species) [taxon 9031], Homo sapiens (human, species) [taxon 9606], Danio rerio (leopard danio, species) [taxon 7955]
- **Cell lines:** C3H10T1/2 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0190)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12967642/full.md

## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC12967642/full.md

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Source: https://tomesphere.com/paper/PMC12967642