# SMPD1 as a Potential Prognostic Biomarker in Glioma Is Associated With an Immunosuppressive Microenvironment

**Authors:** Yanan Xu, Xing Liu, Boya Xu, Qiuling Li, Luofei Zhang, Cao Li, Zhigang Zhao

PMC · DOI: 10.1002/cns.70813 · CNS Neuroscience & Therapeutics · 2026-03-07

## TL;DR

SMPD1 is a potential biomarker in glioma linked to poor prognosis and an immunosuppressive environment, suggesting a role in tumor progression and immunotherapy.

## Contribution

This study identifies SMPD1 as a novel prognostic biomarker and therapeutic target in glioma associated with immune cell infiltration and tumor progression.

## Key findings

- High SMPD1 levels correlate with poor prognosis and immunosuppressive tumor microenvironment in gliomas.
- ASM inhibition promotes M1 macrophage polarization and suppresses tumor growth in vivo.
- SMPD1 expression is elevated in high-grade, IDH-wildtype, and MGMT-unmethylated gliomas.

## Abstract

Acid sphingomyelinase (ASM), encoded by SMPD1, regulates sphingolipid metabolism and has been implicated in tumor progression and immune modulation. However, its role in glioma remains poorly defined.

We performed a comprehensive analysis of SMPD1 in gliomas using TCGA and CGGA datasets, evaluating its expression patterns, prognostic significance, immune correlations, pathway enrichment, and copy number variation. Using qRT–PCR, we validated in vitro the effect of SMPD1 expression on macrophage polarization. Immunofluorescence staining was used to assess the levels of ASM of clinical samples and its correlation with tumor‐associated macrophages. The functional role of SMPD1 was further validated in vivo.

SMPD1 expression was significantly elevated in high‐grade, IDH‐wildtype, and MGMT‐unmethylated gliomas. High SMPD1 levels were associated with poor prognosis and served as an independent prognostic factor. Tumors with elevated SMPD1 showed increased infiltration of regulatory T cells and M0/M2 macrophages. SMPD1 expression correlated with multiple immune cell markers and immune checkpoint molecules. Cell‐based experiments showed that knocking out or inhibiting ASM drives macrophages toward an M1 phenotype while suppressing M2 polarization. Immunofluorescence analysis confirmed upregulation of ASM protein in high‐grade, IDH‐wildtype gliomas, with a strong positive correlation with CD163 expression in clinical samples. In vivo, inhibition of SMPD1 significantly suppressed glioma growth.

SMPD1 is a potential biomarker and therapeutic target in gliomas. Its upregulation may contribute to the formation of an immunosuppressive microenvironment and promote tumor progression, highlighting its potential relevance in glioma immunotherapy.

SMPD1 expression varies across different glioma subtypes and clinical features and is associated with poor prognosis. High SMPD1 levels are linked to an immunosuppressive tumor microenvironment, characterized by suppressed M1 macrophage polarization and enhanced M2‐like signatures. In vivo, ASM deficiency was associated with reduced glioma growth. Collectively, these results support SMPD1 as a candidate prognostic biomarker and potential therapeutic target in glioma.

## Linked entities

- **Genes:** SMPD1 (sphingomyelin phosphodiesterase 1) [NCBI Gene 6609]
- **Proteins:** SMPD1 (sphingomyelin phosphodiesterase 1)
- **Diseases:** glioma (MONDO:0021042)

## Full-text entities

- **Genes:** SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, ARG1 (arginase 1) [NCBI Gene 383], VTCN1 (V-set domain containing T cell activation inhibitor 1) [NCBI Gene 79679] {aka B7-H4, B7H4, B7S1, B7X, B7h.5, PRO1291}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, SIGLEC7 (sialic acid binding Ig like lectin 7) [NCBI Gene 27036] {aka AIRM-1, AIRM1, CD328, CDw328, D-siglec, QA79}, MGMT (O-6-methylguanine-DNA methyltransferase) [NCBI Gene 4255], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, SMPD1 (sphingomyelin phosphodiesterase 1) [NCBI Gene 6609] {aka ASM, ASMASE, NPD}, SIGLEC9 (sialic acid binding Ig like lectin 9) [NCBI Gene 27180] {aka CD329, CDw329, FOAP-9, OBBP-LIKE, siglec-9}, Cd163 (CD163 antigen) [NCBI Gene 93671] {aka CD163v2, CD163v3}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, FCGR2A (Fc gamma receptor IIa) [NCBI Gene 2212] {aka CD32, CD32A, CDw32, FCG2, FCGR2, FCGR2A1}, NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, Smpd1 (sphingomyelin phosphodiesterase 1, acid lysosomal) [NCBI Gene 20597] {aka A-SMase, ASM, Zn-SMase, aSMase}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, PDCD1LG2 (programmed cell death 1 ligand 2) [NCBI Gene 80380] {aka B7DC, Btdc, CD273, PD-L2, PDCD1L2, PDL2}, ATRX (ATRX chromatin remodeler) [NCBI Gene 546] {aka JMS, MRX52, RAD54, RAD54L, XH2, XNP}, FCGR1A (Fc gamma receptor Ia) [NCBI Gene 2209] {aka CD64, CD64A, FCG1, FCGR1, FCRI, FcgammaRI}, KLRK1 (killer cell lectin like receptor K1) [NCBI Gene 22914] {aka CD314, D12S2489E, KLR, NKG2-D, NKG2D}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, IRF5 (interferon regulatory factor 5) [NCBI Gene 3663] {aka SLEB10}, Arg1 (arginase, liver) [NCBI Gene 11846] {aka AI, Arg-1, PGIF}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, MSR1 (macrophage scavenger receptor 1) [NCBI Gene 4481] {aka CD204, SCARA1, SR-A, SR-AI, SR-AII, SR-AIII}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, FCGR3A (Fc gamma receptor IIIa) [NCBI Gene 2214] {aka CD16-II, CD16A, FCG3, FCGR3, FCRIIIA, FcGRIIIA}
- **Diseases:** breast, prostate, and colorectal cancers (MESH:D001943), oligodendrogliomas (MESH:D009837), infectious disease (MESH:D003141), GBM (MESH:D005909), NSCLC (MESH:D002289), astrocytomas (MESH:D001254), Glioma (MESH:D005910), melanoma (MESH:D008545), Inflammatory (MESH:D007249), death (MESH:D003643), Cancer (MESH:D009369), psychiatric disorders (MESH:D001523)
- **Chemicals:** CO2 (MESH:D002245), fluoxetine (MESH:D005473), TRIzol (MESH:C411644), amitriptyline (MESH:D000639), LPS (MESH:D008070), lipid (MESH:D008055), phosphatidylinositol-3-phosphate (MESH:C055525), sphingolipid (MESH:D013107), Ceramide (MESH:D002518), DAPI (MESH:C007293), sphingomyelin (MESH:D013109), A8404 (-), imipramine (MESH:D007099), penicillin (MESH:D010406), temozolomide (MESH:D000077204), streptomycin (MESH:D013307)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** R132H, R248Q
- **Cell lines:** GL261 — Mus musculus (Mouse), Mouse glioblastoma, Cancer cell line (CVCL_Y003), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

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## Figures

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## References

71 references — full list in the complete paper: https://tomesphere.com/paper/PMC12967462/full.md

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Source: https://tomesphere.com/paper/PMC12967462