# A Dangerous Prey Fish? Brachyspira‐Rich Gastrointestinal Microbiota in Pompano Dolphinfish From Neritic and Deep Waters of the South China Sea

## TL;DR

Pompano dolphinfish in the South China Sea have gut microbes dominated by Brachyspira, a potential pathogen that may spread from coastal to deep-sea ecosystems.

## Contribution

The study identifies Brachyspira as a dominant gut microbe in dolphinfish and suggests a novel ecological route for pathogen dispersal in marine ecosystems.

## Key findings

- Gut microbiota of pompano dolphinfish is simplified and dominated by Brachyspira in both neritic and deep-sea habitats.
- Brachyspira was detected in nearshore seawater eDNA, suggesting coastal acquisition and offshore transport by fish.
- Gut microbiota functions suggest adaptation to anthropogenic stressors and pathogenic processes.

## Abstract

The gastrointestinal microbiota of marine fishes plays important roles in host physiology and ecosystem processes yet remains poorly characterized. Here, we used 16S rRNA metabarcoding to examine the gastrointestinal microbiota of pompano dolphinfish (Coryphaena equiselis
) collected from a neritic site (< 200 m) and a deep‐sea site (> 3800 m) in the South China Sea. Across sites, the microbial community was unexpectedly simplified and strongly dominated by Spirochaetes, particularly the genus Brachyspira. Because Brachyspira includes well‐documented pathogens of terrestrial animals, its high prevalence raises concern that pompano dolphinfish may act as reservoirs of potentially pathogenic bacteria with the capacity for trophic transfer. Coastal exposure may represent a critical source: Brachyspira was also detected at low levels in seawater eDNA from nearshore habitats, suggesting that dolphinfish could acquire these microbes during neritic stages and subsequently transport them into deep‐sea ecosystems. Functional predictions further revealed that gastrointestinal microbiota from both sites were closely associated with pathogenic processes, while neritic individuals additionally exhibited enrichment of functions linked to adaptation to anthropogenic stressors. Our findings underscore the ecological importance of dolphinfish microbiota as both a reservoir of potentially pathogenic lineages and a sensitive indicator of environmental stress in marine ecosystems.

This study reveals an unexpectedly simplified, Brachyspira‐dominated gastrointestinal microbiota in pompano dolphinfish from both neritic and deep‐sea habitats of the South China Sea. Environmental DNA and functional analyses suggest these fish may acquire potential pathogens in anthropogenically influenced coastal waters and transport them offshore, highlighting a novel ecological route for pathogen dispersal in marine ecosystems.