# Trans‐Omics Integration Reveals That the Kidney Contributes to Systemic Aging via Sexually Dimorphic Accumulation of Glycosphingolipids

**Authors:** Zhen Ni, Chenyin Cao, Yanlin Tian, Jinming Mu, He Tian, Zehua Wang, Shaohua Zhang, Mingjun Cao, Yuntian Yang, Wei Ling Florence Lim, Jingkang Cui, Huan Sun, Huan Miao, Yuan Wang, Jie Du, Timothy Kwok, Huan Chen, Sin Man Lam, Guanghou Shui

PMC · DOI: 10.1002/mco2.70669 · MedComm · 2026-03-07

## TL;DR

The kidney contributes to aging by accumulating fats, especially in females, which leads to mitochondrial dysfunction and systemic aging.

## Contribution

The study reveals a sex-specific mechanism linking kidney metabolism to systemic aging through glycosphingolipid accumulation and mTORC1 signaling.

## Key findings

- Age-related accumulation of glucosylceramide in the kidney correlates with systemic uremic toxins and mortality risk.
- Female-specific GluCer accumulation disrupts mitochondrial function via purine-dependent mTORC1 activation.
- Pharmacological purine depletion rescues mitochondrial dysfunction and reduces systemic aging effects.

## Abstract

Age‐associated deterioration of physiological functions occurs at heterogeneous rates across individual organs. A granular evaluation of systemic metabolic mediators of aging in a healthy human cohort (n = 225) identified prominent increases in circulating uremic toxins, a finding recapitulated in mice. We connected these systemic aging profiles to renal metabolism, specifically linking glucosylceramide (GluCer) accretion to renal functional decline at late middle‐age that coincides with the temporal surge in uremic toxins. Importantly, age‐associated increases in circulating GluCer, largely contributed by the kidneys, are conserved from mice to humans, and are significantly associated with enhanced risk of multiple causes of mortality in aged individuals. We further showed that GluCer accumulation, commencing in late middle‐age of females, impairs mitophagy via disrupting mitochondria–lysosome untethering, and undermines mitochondrial respiratory function via purine‐dependent activation of mTORC1 signaling that can be rescued by pharmacological purine depletion. The resulting age‐associated renal dysfunction is female‐biased, likely due to sexually dimorphic GluCer handling. Our work provides a molecular basis for the sex‐specific benefits of mTOR inhibition on lifespan, and highlights clinically relevant inhibitors of purine metabolism as potential senotherapeutics to mitigate kidney‐driven systemic aging.

Female‐specific renal GluCer accumulation disrupts mitochondrial quality control via a conserved purine‐mTORC1 pathway, triggering a wave of uremic toxins into the systemic circulation that constitutes a female‐biased vulnerability toward renal‐driven multiorgan senescence. As estrogen levels fall in late middle‐age, GluCer accumulates in female kidneys. Elevated purines activate mTOR, disrupt mitophagy, suppress PGC1α, and impair mitochondrial–lysosome untethering, leading to mitochondrial dysfunction and reduced ATP production. Renal failure promotes systemic accumulation of uremic toxins and multiorgan senescence. Purine inhibition attenuates mTOR activation and restores mitochondrial homeostasis, highlighting a potential senotherapeutic strategy.

## Linked entities

- **Proteins:** PPARGC1A (PPARG coactivator 1 alpha), Crtc (CREB-regulated transcription coactivator)
- **Chemicals:** glucosylceramide (PubChem CID 178331063), purine (PubChem CID 1044)
- **Species:** Mus musculus (taxon 10090), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** Ces1e (carboxylesterase 1E) [NCBI Gene 13897] {aka Eg, Es-22, Es22, egasyn}, Ager (advanced glycosylation end product-specific receptor) [NCBI Gene 11596] {aka RAGE}, Xdh (xanthine dehydrogenase) [NCBI Gene 22436] {aka XO, Xor, Xox-1, Xox1}, Akt1s1 (AKT1 substrate 1) [NCBI Gene 67605] {aka 1110012J22Rik, Lobe, Lobel, PRAS40}, Mfn1 (mitofusin 1) [NCBI Gene 67414] {aka 2310002F04Rik, 6330416C07Rik, D3Ertd265e, HR2, mKIAA4032}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, Impdh2 (inosine monophosphate dehydrogenase 2) [NCBI Gene 23918] {aka IMPD, IMPD 2, IMPDH-II}, Rictor (RPTOR independent companion of MTOR, complex 2) [NCBI Gene 78757] {aka 4921505C17Rik, 6030405M08Rik, AVO3, D530039E11Rik}, Fis1 (fission, mitochondrial 1) [NCBI Gene 66437] {aka 2010003O14Rik, Ttc11}, Tbc1d15 (TBC1 domain family, member 15) [NCBI Gene 66687] {aka 4432405K22Rik, Ly6dl, Rab7-GAP}, DAPK2 (death associated protein kinase 2) [NCBI Gene 23604] {aka DRP-1, DRP1}, Renbp (renin binding protein) [NCBI Gene 19703] {aka Age, Rnbp}, Hprt1 (hypoxanthine phosphoribosyltransferase 1) [NCBI Gene 15452] {aka HPGRT, Hprt}, Slc22a7 (solute carrier family 22 (organic anion transporter), member 7) [NCBI Gene 108114] {aka NLT, OAT2}, Pink1 (PTEN induced putative kinase 1) [NCBI Gene 68943] {aka 1190006F07Rik, BRPK, mFLJ00387}, Nme4 (NME/NM23 nucleoside diphosphate kinase 4) [NCBI Gene 56520] {aka 2610027N22Rik, 2810024O08Rik, 5730493H09Rik, NDK, NDK4, NDPK-D}, OPA1 (OPA1 mitochondrial dynamin like GTPase) [NCBI Gene 4976] {aka BERHS, MGM1, MTDPS14, MTDPS14A, MTDPS14B, NPG}, Nme7 (NME/NM23 family member 7) [NCBI Gene 171567] {aka D530024H21Rik, NDK7, Nm23-M7, Nm23-r7, nm23-H7}, Mfn2 (mitofusin 2) [NCBI Gene 170731] {aka D630023P19Rik, Fzo}, SLC6A19 (solute carrier family 6 member 19) [NCBI Gene 340024] {aka B0AT1, HND}, Tsc22d1 (TSC22 domain family, member 1) [NCBI Gene 21807] {aka Egr5, Gm19597, TSC-22, Tgfb1i4, Tsc, Tsc22}, Ugcg (UDP-glucose ceramide glucosyltransferase) [NCBI Gene 22234] {aka Epcs21, GlcT-1, Ugcgl}, Rps6kb1 (ribosomal protein S6 kinase B1) [NCBI Gene 72508] {aka 2610318I15Rik, P70S6K1, S6K, S6K-beta-1, S6K1, p70 S6K-alpha}, Map1lc3b (microtubule-associated protein 1 light chain 3 beta) [NCBI Gene 67443] {aka 1010001C15Rik, Atg8, LC3b, MAP1A/MAP1B, Map1lc3}, PINK1 (PTEN induced kinase 1) [NCBI Gene 65018] {aka BRPK, PARK6}, Gba1 (glucosylceramidase beta 1) [NCBI Gene 14466] {aka GC, GCase, GLUC, Gba, betaGC}, Dapk2 (death-associated protein kinase 2) [NCBI Gene 13143], Dhfr (dihydrofolate reductase) [NCBI Gene 13361] {aka 8430436I03Rik}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Crp (C-reactive protein, pentraxin-related) [NCBI Gene 12944], Deptor (DEP domain containing MTOR-interacting protein) [NCBI Gene 97998] {aka Depdc6}, Ppargc1a (peroxisome proliferative activated receptor, gamma, coactivator 1 alpha) [NCBI Gene 19017] {aka A830037N07Rik, Gm11133, PGC-1, PPARGC-1-alpha, Pgc-1alpha, Pgc1}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Sqstm1 (sequestosome 1) [NCBI Gene 18412] {aka A170, OSF-6, Osi, STAP, STONE14, p62}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, Map1lc3a (microtubule-associated protein 1 light chain 3 alpha) [NCBI Gene 66734] {aka 1010001H21Rik, 4922501H04Rik, LC3, LC3a}, Opa1 (OPA1, mitochondrial dynamin like GTPase) [NCBI Gene 74143] {aka 1200011N24Rik, lilr3, mKIAA0567}, Ccl21a (C-C motif chemokine ligand 21 (serine)) [NCBI Gene 18829] {aka 6CKBAC2, 6Ckine, ALP, CKb9, Gm1987, SCYA21a}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060]
- **Diseases:** urea disorders (MESH:D056806), glomerulonephritis (MESH:D005921), diabetic complications (MESH:D048909), Death (MESH:D003643), hypertension (MESH:D006973), renal functional deficits (MESH:D001289), PCTCs (MESH:D017119), cardiovascular disease (MESH:D002318), infection (MESH:D007239), Uremic toxins (MESH:D006463), myocardial infarction (MESH:D009203), obstructive lung disease (MESH:D008173), impaired kidney function (MESH:D007674), proinflammatory cytokines (MESH:D000080424), chronic diseases (MESH:D002908), metabolic disturbances (MESH:D024821), renal fibrosis (MESH:D005355), uremia (MESH:D014511), Mitochondrial Dysfunction (MESH:D028361), PD (MESH:D010300), renal tubule damage (MESH:D007673), tubular (MESH:D000230), diabetes (MESH:D003920), deterioration of physiological functions (MESH:D012735), Renal failure (MESH:D051437), Alzheimer's disease (MESH:D000544), renal functional decline (MESH:D060825), CKD (MESH:D051436), organ dysfunction (MESH:D009102), Deteriorated renal function (MESH:D058186), Gaucher's disease (MESH:D005776), nephritis (MESH:D009393), chronic obstructive pulmonary disease (MESH:D029424), renal (MESH:D006030), ischemia (MESH:D007511)
- **Chemicals:** bile acids (MESH:D001647), 1-methylguanosine (MESH:C020770), 2-C-mannoside (-), Hematoxylin (MESH:D006416), carnitine (MESH:D002331), EG (MESH:C522917), Na (MESH:D012964), L-cystine (MESH:D003553), TG (MESH:D013866), xanthosine (MESH:C005893), Hcy (MESH:D006710), amino acids (MESH:D000596), urea (MESH:D014508), pseudouridine (MESH:D011560), phenylhydrazine (MESH:C030299), 1-methyladenosine (MESH:C002230), carbohydrates (MESH:D002241), arginine (MESH:D001120), phosphatidylcholines (MESH:D010713), 6-MP (MESH:D015122), purine nucleotides (MESH:D011685), creatine (MESH:D003401), CEs (MESH:D002788), acylcarnitines (MESH:C116917), succinyladenosine (MESH:C043565), GalCer (MESH:D005699), TCA (MESH:D014238), SYBR Green (MESH:C098022), PE-Os (MESH:D010714), citric acid (MESH:D019343), ATP (MESH:D000255), adenylates (MESH:D000249), Purine (MESH:C030985), Lipid (MESH:D008055), urea nitrogen (MESH:C530477), DE (MESH:D004054), chloroform (MESH:D002725), tryptophan (MESH:D014364), DAGs (MESH:D004075), guanosine (MESH:D006151), LPCs (MESH:D008244), sphingolipid (MESH:D013107), NAD+ (MESH:D009243), eosin (MESH:D004801), lysine (MESH:D008239), creatinine (MESH:D003404), glucose (MESH:D005947), sodium chloride (MESH:D012965), methanol (MESH:D000432), adenosine (MESH:D000241), methionine (MESH:D008715), MA (MESH:D009173), hypoxanthine (MESH:D019271), TC (MESH:D013667), 1-methylinosine (MESH:C012433), Oxygen (MESH:D010100), uridine (MESH:D014529), glycerophospholipids (MESH:D020404), sugars (MESH:D000073893), carboxylic acids (MESH:D002264)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** A53T, (AUC) of 0

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12966803/full.md

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12966803/full.md

## References

88 references — full list in the complete paper: https://tomesphere.com/paper/PMC12966803/full.md

---
Source: https://tomesphere.com/paper/PMC12966803