# HIV-1 integrase resistance in the context of antiretroviral therapy in paediatric patients ‒ Northeast Brazil

**Authors:** Aldicléya Lima Luz, Élcio Leal, Kledoaldo Lima, Mikhael Morais de Souza, Michelle Lima de Carvalho Silva, Mayra Moura Lima, Paloma Gomes Tavares Sette, Yasmim Leandra Moura de Almeida, Heloísa Ramos Lacerda de Melo

PMC · DOI: 10.1016/j.bjid.2026.105788 · 2026-02-28

## TL;DR

This study examines INSTI resistance in HIV-infected children in Brazil, finding high mutation rates that suggest the need for ongoing monitoring.

## Contribution

The study provides new insights into INSTI resistance mutations in vertically infected children in Northeast Brazil.

## Key findings

- 74.5% of patients had HIV-1 subtype B.
- 64.5% of patients showed INSTI resistance mutations.
- High resistance rates to raltegravir were observed in 70.9% of patients.

## Abstract

Antiretroviral drug resistance poses a challenge to therapy efficacy. Although Integrase Strand Transfer Inhibitors (INSTIs) have a high genetic barrier to resistance, few studies in Brazil have focused on INSTI resistance. This study aimed to assess HIV mutations associated with INSTI resistance in vertically infected children in Maranhão and Pernambuco, Brazil.

We conducted a retrospective analysis of antiretroviral resistance profiles in paediatric patients with virological failure receiving care through the Brazilian Unified Health System. Data on viral load, CD4+/CD8+ T-cell counts, and medication dispensing were obtained from Ministry of Health databases (SISGENO, SISCEL, and SICLOM). HIV-1 integrase sequences were analysed. Phylogenetic analysis (IQ-TREE) was used to identify subtypes and recombinants. Resistance-associated mutations were determined using the Stanford HIV Drug Resistance Database.

Thirty-one paediatric patients (median age = 12-years) were included. Mean CD4+ count was 999 cells/mm³, and median viral load was 19,235 copies/mL. Subtype B and INSTI resistance mutations were detected in 74.5 % and 64.5 % of patients, respectively. High resistance rates to raltegravir (70.9 %) were observed, highlighting the importance of genotypic monitoring.

A high frequency of INSTI resistance-associated mutations was identified, indicating the need for continued surveillance in this population.

## Linked entities

- **Chemicals:** raltegravir (PubChem CID 54671008)

## Full-text entities

- **Genes:** CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}
- **Diseases:** HIV (MESH:D015658), infected (MESH:D007239), DRMs (MESH:D000069279), DRM (MESH:C580316), Virological failure (MESH:D051437)
- **Chemicals:** Cabotegravir (MESH:C584914), BIC (MESH:C100119), ABC (MESH:C106538), DRV/r (-), AZT (MESH:D015215), NVP (MESH:D019829), LPV/r (MESH:C558899), EFV (MESH:C098320), DTG (MESH:C562325), 3TC (MESH:D019259), Raltegravir (MESH:D000068898), tenofovir disoproxil fumarate (MESH:D000068698), EVG (MESH:C509700), Bictegravir (MESH:C000620396)
- **Species:** Human immunodeficiency virus (species) [taxon 12721], Homo sapiens (human, species) [taxon 9606], Human immunodeficiency virus 1 (no rank) [taxon 11676]
- **Mutations:** Y143R, Y143H, G140S, Y143H/R/G, Y143G, N155H, Q148H, Q148K

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12966703/full.md

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Source: https://tomesphere.com/paper/PMC12966703