# Extracellular vesicles from stem cells rescue cellular phenotypes and behavioral deficits in SHANK3-associated ASD neuronal and mouse models

**Authors:** Ashwani Choudhary, Idan Rosh, Yara Hussein, Shai Netser, Aviram Shemen, Taghreed Suliman, Wote Amelo Rike, Lilach Simchi, Boris Shklyar, Ahmad Abu-Akel, Assaf Zinger, Daniel Offen, Shlomo Wagner, Shani Stern

PMC · DOI: 10.1038/s41419-026-08474-x · 2026-02-22

## TL;DR

Stem cell-derived extracellular vesicles can reverse abnormal brain cell activity and behavior in models of a genetic disorder linked to autism.

## Contribution

This study demonstrates that extracellular vesicles from stem cells rescue synaptic and behavioral deficits in SHANK3-associated ASD models.

## Key findings

- SHANK3 mutant-derived EVs transfer hyperexcitability and accelerated maturation to control neurons.
- MSC and iPSC-derived EVs rescue hyperexcitability and normalize maturation in SHANK3 mutant neurons.
- Intranasal EV administration in mice rescues ASD-like behavioral deficits.

## Abstract

Extracellular vesicles (EVs) are lipid bilayer-enclosed structures that mediate intercellular communication by transferring diverse cargoes, including RNA and proteins. SHANK3, a synaptic scaffolding protein critical for synapse structure and function, is implicated in autism spectrum disorder (ASD) and Phelan-McDermid Syndrome (PMS). Early hyperexcitability in cortical neurons is a characterized endophenotype in ASD. Here, we investigated EV-mediated effects in the context of SHANK3 deficiency using human iPSC-derived cortical neurons and Shank3B−/− mice. Switching EVs between SHANK3 mutant and control neurons revealed that SHANK3 mutant-derived EVs transferred the hyperexcitability and accelerated maturation phenotypes to control neurons. Proteomic analysis revealed enrichment of synaptic structural regulators (e.g., ACTB, CFL1, AGRN, and CLSTN1) in SHANK3 mutant neuron-derived EVs. This is consistent with known actin cytoskeletal dysregulation driven by SHANK3 deficiency. However, control neuron-derived EVs failed to rescue mutant phenotypes, likely due to their decreased enrichment of synaptic proteins and related pathways. Further, EVs from mesenchymal stem cells (MSCs) and healthy donor iPSCs, containing synaptic modulators such as complement proteins (C1R, C1S), plasticity-associated proteins (MDK, IGFBP3), and homeostatic regulators (FGF2, SFRP1), rescued the hyperexcitability and normalized the maturation in SHANK3 mutant neurons. In addition, intranasal administration of iPSC-derived EVs in Shank3B−/− mice significantly rescued ASD-like behavioral deficits, emphasizing their therapeutic potential. Together, these findings reveal a novel EV-mediated mechanism for modulating dysregulated excitability and synaptic maturation, addressing a critical unmet need in ASD and associated neurodevelopmental disorders.

## Linked entities

- **Genes:** SHANK3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 85358], ACTB (actin beta) [NCBI Gene 60], CFL1 (cofilin 1) [NCBI Gene 1072], AGRN (agrin) [NCBI Gene 375790], CLSTN1 (calsyntenin 1) [NCBI Gene 22883], C1R (complement C1r) [NCBI Gene 715], C1S (complement C1s) [NCBI Gene 716], MDK (midkine) [NCBI Gene 4192], IGFBP3 (insulin like growth factor binding protein 3) [NCBI Gene 3486], FGF2 (fibroblast growth factor 2) [NCBI Gene 2247], SFRP1 (secreted frizzled related protein 1) [NCBI Gene 6422]
- **Diseases:** autism spectrum disorder (MONDO:0005258), Phelan-McDermid Syndrome (MONDO:0011652)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** C1qtnf3 (C1q and tumor necrosis factor related protein 3) [NCBI Gene 81799] {aka 2310005P21Rik, Adim, CORS-26, CORS26, CTRP3, Corcs}, Cfh (complement component factor h) [NCBI Gene 12628] {aka Mud-1, NOM, Sas-1, Sas1}, FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, CAT (catalase) [NCBI Gene 847], Bcl11b (B cell leukemia/lymphoma 11B) [NCBI Gene 58208] {aka 9130430L19Rik, B630002E05Rik, BCL-11B, Ctip2, Rit1}, Sh2b2 (SH2B adaptor protein 2) [NCBI Gene 23921] {aka Aps}, Canx (calnexin) [NCBI Gene 12330] {aka 1110069N15Rik, Cnx, D11Ertd153e}, Gdnf (glial cell line derived neurotrophic factor) [NCBI Gene 14573] {aka ATF}, MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, Agrn (agrin) [NCBI Gene 11603] {aka Agrin, nmf380}, Shank3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 58234] {aka Spank-2, proSAP2}, Calm3 (calmodulin 3) [NCBI Gene 12315] {aka CaMA, Cam3, Camc}, Sfrp1 (secreted frizzled-related protein 1) [NCBI Gene 20377] {aka 2210415K03Rik, sFRP-1}, Tff2 (trefoil factor 2 (spasmolytic protein 1)) [NCBI Gene 21785] {aka SP, mSP}, Cat (catalase) [NCBI Gene 12359] {aka 2210418N07, Cas-1, Cas1, Cs-1}, B2m (beta-2 microglobulin) [NCBI Gene 12010] {aka Ly-m11, beta2-m, beta2m}, Nt5e (5' nucleotidase, ecto) [NCBI Gene 23959] {aka 2210401F01Rik, 5'-NT, CD73, NT, Nt5, eNT}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Cd63 (CD63 antigen) [NCBI Gene 12512] {aka ME491, Tspan30}, SHANK2 (SH3 and multiple ankyrin repeat domains 2) [NCBI Gene 22941] {aka AUTS17, CORTBP1, CTTNBP1, ProSAP1, SHANK, SPANK-3}, Tpm4 (tropomyosin 4) [NCBI Gene 326618] {aka 2610528G24Rik, Tpm4.2, Tpm4.2cy}, Dsc1 (desmocollin 1) [NCBI Gene 13505] {aka 1110020A10Rik}, Map2 (microtubule-associated protein 2) [NCBI Gene 17756] {aka G1-397-34, MAP-2, Mtap-2, Mtap2, repro4}, Anxa1 (annexin A1) [NCBI Gene 16952] {aka Anx-1, Anx-A1, C430014K04Rik, Lpc-1, Lpc1}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, CD63 (CD63 molecule) [NCBI Gene 967] {aka AD1, HOP-26, ME491, MLA1, OMA81H, Pltgp40}, DLG4 (discs large MAGUK scaffold protein 4) [NCBI Gene 1742] {aka MRD62, PSD95, SAP-90, SAP90}, MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, Cacna2d1 (calcium channel, voltage-dependent, alpha2/delta subunit 1) [NCBI Gene 12293] {aka Ca(v)alpha2delta1, Cacna2, Cchl2a}, Mdk (midkine) [NCBI Gene 17242] {aka MK, Mek}, Cfd (complement factor D) [NCBI Gene 11537] {aka Adn, DF}, Pdcd6ip (programmed cell death 6 interacting protein) [NCBI Gene 18571] {aka Aip1, Alix, Eig2, mKIAA1375}, Igfbp3 (insulin-like growth factor binding protein 3) [NCBI Gene 16009] {aka IGFBP-3, IGgfbp3}, Anxa2 (annexin A2) [NCBI Gene 12306] {aka Cal1h, PAP-IV, p36}, Golga2 (golgin A2) [NCBI Gene 99412] {aka GM130}, Timp2 (tissue inhibitor of metalloproteinase 2) [NCBI Gene 21858] {aka D11Bwg1104e, Timp-2}, Bdnf (brain derived neurotrophic factor) [NCBI Gene 12064], Dsp (desmoplakin) [NCBI Gene 109620] {aka 2300002E22Rik, 5730453H04Rik, DP, rul}, Fgf2 (fibroblast growth factor 2) [NCBI Gene 14173] {aka Fgf-2, Fgf2a, Fgfb, bFGF}, Actg1 (actin, gamma, cytoplasmic 1) [NCBI Gene 11465] {aka Actg, Actl, E51}, Cd81 (CD81 antigen) [NCBI Gene 12520] {aka Tapa-1, Tapa1, Tspan28}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, SHANK3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 85358] {aka DEL22q13.3, PROSAP2, PSAP2, SCZD15, SPANK-2}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Cfl1 (cofilin 1, non-muscle) [NCBI Gene 12631] {aka Cof}, C1ra (complement component 1, r subcomponent A) [NCBI Gene 50909] {aka C1r, mC1rA}, Fn1 (fibronectin 1) [NCBI Gene 14268] {aka E330027I09, Fn, Fn-1}, C1s1 (complement component 1, s subcomponent 1) [NCBI Gene 50908] {aka C1s, C1sa}, Tspyl2 (TSPY-like 2) [NCBI Gene 52808] {aka CDA1, CINAP, DENTT, DXBwg1396e, DXHXS1008E, E130307F10Rik}, Clstn1 (calsyntenin 1) [NCBI Gene 65945] {aka 1810034E21Rik, Cst-1, Cstn1}, Dsg1a (desmoglein 1 alpha) [NCBI Gene 13510] {aka DG1, DGI, Dsg1, dsg1-alpha}, C1qa (complement component 1, q subcomponent, alpha polypeptide) [NCBI Gene 12259] {aka Adic, C1q}, Anxa5 (annexin A5) [NCBI Gene 11747] {aka Anx5, CPB-I}, Vtn (vitronectin) [NCBI Gene 22370] {aka Vn}
- **Diseases:** AD (MESH:D000544), behavioral (MESH:D001523), Autism (MESH:D001321), behavioral deficits (MESH:D019958), delayed speech and language development (MESH:D007805), IDs (MESH:C535742), SCZ (MESH:D012559), social dysfunction (MESH:D000067404), neurodegenerative diseases (MESH:D019636), neurodevelopmental condition (MESH:D020763), inflammatory (MESH:D007249), glioma (MESH:D005910), ALS (MESH:D000690), ID (MESH:D008607), ASD (MESH:D000067877), PD (MESH:D010300), synaptic dysfunction (MESH:C536122), neurological disorders (MESH:D009461), neurodevelopmental disorders (MESH:D002658), cognitive deficits (MESH:D003072), communication (MESH:D003147), impaired emotion recognition (MESH:D020238), Neuronal hyperexcitability (MESH:D009410), 22q13.3 deletion syndrome (MESH:C536801)
- **Chemicals:** DPBS (MESH:C012939), F12 (MESH:C007782), amino acid (MESH:D000596), N2 (MESH:D009584), Triton X-100 (MESH:D017830), PKH-67 (MESH:C451241), Biogems (-), GTP (MESH:D006160), NaCl (MESH:D012965), Retinoic Acid (MESH:D014212), K (MESH:D011188), Na + (MESH:D012964), HEPES (MESH:D006531), KCl (MESH:D011189), PBS (MESH:D007854), CaCl2 (MESH:D002122), Tween (MESH:D011136), poly-L-ornithine (MESH:C008973), PVDF (MESH:C024865), L-Ascorbic Acid (MESH:D001205), heparin (MESH:D006493), Glutamax (MESH:C054122), D-glucose (MESH:D005947), DAPI (MESH:C007293), cAMP (MESH:D000242), calcium (MESH:D002118), Dibutyryl-cAMP (MESH:D003994), RA (MESH:D011883), water (MESH:D014867), Mg-ATP (MESH:D000255), EGTA (MESH:D004533), L-glutamine (MESH:D005973), paraformaldehyde (MESH:C003043), lipid (MESH:D008055)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Gallus gallus (bantam, species) [taxon 9031], Drosophila melanogaster (fruit fly, species) [taxon 7227]
- **Mutations:** A350V, E326K, 3679insG

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12966433/full.md

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Source: https://tomesphere.com/paper/PMC12966433