# Expression, purification, and crystallization of recombinant human ABL-1 kinase for X-ray crystallography

**Authors:** Ayça İRGİT, Halilibrahim ÇİFTÇİ, Hasan DEMİRCİ

PMC · DOI: 10.55730/1300-0527.3776 · 2025-12-05

## TL;DR

This paper describes the successful expression, purification, and crystallization of the ABL-1 kinase domain for structural studies to aid in drug development for CML.

## Contribution

A novel method for solubilizing and purifying recombinant human ABL-1 kinase for X-ray crystallography is presented.

## Key findings

- The ABL-1 kinase domain was successfully expressed and purified in E. coli using a SUMO-tag and sarkosyl detergent.
- Crystallization trials were initiated to determine the structure of ABL-1 for drug development in CML.
- High yield of purified ABL-1 was achieved using Ni-NTA affinity chromatography and ULP1 protease.

## Abstract

Abelson-1 (ABL-1) is a nonreceptor tyrosine kinase that plays essential roles in various cellular processes, including proliferation, survival, differentiation and its kinase activity is tightly regulated. The dysregulated ABL-1 kinase activity is linked to disease pathogenesis like Chronic Myeloid Leukemia (CML), where the BCR::ABL-1 fusion oncoprotein drives oncogenic signaling. Due to its central role in CML pathogenesis, understanding the structure of ABL-1 is crucial for the effective management of the disease and drug development studies. This study focuses on optimizing the expression, purification and crystallization of the recombinant human ABL-1 kinase domain for its structural analysis via X-ray crystallography and structure-based drug screening applications. The human ABL-1 kinase domain, fused with a SUMO-tag, was expressed in Escherichia coli Rosetta2 BL21 using the pET28(a)+ expression vector. The ABL-1 aggregates seen under native culture conditions were successfully solubilized by the mild ionic detergent sarkosyl. After obtaining soluble expression of the protein, Ni-NTA affinity chromatography was performed and high yield of purified ABL-1 was obtained. The 6X-His-SUMO-tag of purified ABL1 was cleaved by ULP1 protease. The recombinant ABL-1 was subsequently used in crystallization trials to enlighten structural features of ABL-1 that could guide the development of novel therapeutics and drug screening platforms targeting ABL-1 in CML.

## Linked entities

- **Genes:** ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25]
- **Proteins:** ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase)
- **Chemicals:** sarkosyl (PubChem CID 7348)
- **Diseases:** Chronic Myeloid Leukemia (MONDO:0011996), CML (MONDO:0011996)
- **Species:** Escherichia coli (taxon 562), Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** LINC01194 (long intergenic non-protein coding RNA 1194) [NCBI Gene 404663] {aka CT49, TAG}, SENP3 (SUMO specific peptidase 3) [NCBI Gene 26168] {aka SMT3IP1, SSP3, Ulp1}, ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25] {aka ABL, BCR-ABL, CHDSKM, JTK7, bcr/abl, c-ABL}, SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714] {aka ASV, SRC1, THC6, c-SRC, p60-Src}
- **Diseases:** hematologic malignancy (MESH:D019337), CML (MESH:D015464), myeloproliferative neoplasm (MESH:D009369)
- **Chemicals:** chloramphenicol (MESH:D002701), kanamycin (MESH:D007612), PES (MESH:C022840), PEG 8000 (MESH:C000595216), SDS (MESH:D012967), Imidazole (MESH:C029899), ATP (MESH:D000255), sodium nitrate (MESH:C031618), agar (MESH:D000362), polymers (MESH:D011108), oil (MESH:D009821), Ni (MESH:D009532), nitrogen (MESH:D009584), His (MESH:D006639), urea (MESH:D014508), Salt (MESH:D012492), paraffin oil (MESH:C015418), glycerol (MESH:D005990), sarkosyl (MESH:C025231), 4H (-), 2H (MESH:D003903), NaCl (MESH:D012965), BIS-TRIS propane (MESH:C034249)
- **Species:** Homo sapiens (human, species) [taxon 9606], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** C2-T, I2481C, C1-T
- **Cell lines:** pET-28a — Oryctolagus cuniculus (Rabbit), Transformed cell line (CVCL_6E94), BL21 — Homo sapiens (Human), EBV-related Burkitt lymphoma, Cancer cell line (CVCL_M639), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12965787/full.md

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Source: https://tomesphere.com/paper/PMC12965787