# Polycomb repression works without Siesta, the Drosophila ortholog of mammalian PCGF3

**Authors:** Tatyana G. Kahn, Andres Garrido, Anastasiya Yushkova, Maria Kim, Alexander Glotov, Sweda Sreekumar, Jan Larsson, Yuri B. Schwartz

PMC · DOI: 10.1126/sciadv.aec0733 · 2026-03-06

## TL;DR

This study shows that a Drosophila protein related to a mammalian PRC1 component doesn't help repress genes but affects larval movement, suggesting a need to revise how PRC1 complexes are classified.

## Contribution

The study reveals that Siesta, a Drosophila PCGF ortholog, functions independently of Polycomb repression and challenges the role of H2A ubiquitylation in gene silencing.

## Key findings

- Canonical PRC1 and variant RING1 complexes ubiquitylate H2A at distinct genomic regions.
- Siesta is not required for repression of developmental genes but controls larval locomotion.
- H2A ubiquitylation has minimal impact on transcriptional repression.

## Abstract

Polycomb group proteins mediate epigenetic repression via multisubunit complexes, including canonical Polycomb Repressive Complex 1 (PRC1), which monoubiquitylates histone H2A and binds histone H3 trimethylated at lysine-27 (H3K27me3). The RING1 subunit of PRC1, critical for H2A ubiquitylation, forms other complexes. These variant RING1 complexes also ubiquitylate H2A but cannot bind H3K27me3, and their role in epigenetic repression is debated. Using Drosophila genetics, we found that canonical PRC1 and variant RING1 complexes ubiquitylate H2A at distinct genomic regions. We established that the Drosophila PCGF protein specific for variant RING1 complexes, which we named Siesta, is not required for epigenetic repression of developmental genes but controls larval locomotion independently of H2A ubiquitylation. Leveraging a massively parallel transgenic approach, we demonstrated that H2A ubiquitylation has minimal impact on transcriptional repression. Our findings imply that Siesta-RING1 complexes operate outside the Polycomb regulatory system and that the popular PRC1 classification will benefit from revision.

The study of the Drosophila PCGF3 ortholog revisits the PRC1 taxonomy and questions the role of H2AK118 ubiquitylation.

## Linked entities

- **Genes:** RING1 (ring finger protein 1) [NCBI Gene 6015], H2AC18 (H2A clustered histone 18) [NCBI Gene 8337]
- **Proteins:** PRC1 (protein regulator of cytokinesis 1), RING1 (ring finger protein 1)
- **Species:** Drosophila (taxon 7215)

## Full-text entities

- **Genes:** pho (pleiohomeotic) [NCBI Gene 43819] {aka CG17743, Dmel\CG17743, PHO/YY1, Ph, YY1, dYY1}, SkpA (SKP1-related A) [NCBI Gene 31016] {aka CG16983, Dmel\CG16983, EG:115C2.4, SKP1, Skp, Skp1}, Su(z)2 (Suppressor of zeste 2) [NCBI Gene 36432] {aka Arp, CG3905, Dmel\CG3905, SUZ2, Su(z)2D, Su(z)3}, Vsx1 (Visual system homeobox 1) [NCBI Gene 31470] {aka CG4136, Chx1, DChx1, DVSX1, Dchx1, Dmel\CG4136}, Psc (Posterior sex combs) [NCBI Gene 36431] {aka 49Ea, CG3886, D-Bmi, Dmel\CG3886, Psc1, Su(z)2-C}, pre (presto) [NCBI Gene 45348], Jarid2 (Jumonji, AT rich interactive domain 2) [NCBI Gene 39103] {aka CG3654, Dmel\CG3654, dJARID2, dJmj, djmj, l(3)j2B8}, Hsd17b8 (hydroxysteroid 17-beta dehydrogenase 8) [NCBI Gene 14979] {aka D17H6S112E, H-2Ke6, H2-Ke6, Ke-6, Ke6, Ring2}, Polr2A (RNA polymerase II subunit A) [NCBI Gene 32100] {aka 5, 8WG16, CG1554, CTD, DmCTD, Dmel\CG1554}, Scm (Sex comb on midleg) [NCBI Gene 41168] {aka CG9495, Dmel\CG9495, Su(z)302, l(3)85Ef}, RAF2 (RING-associated factor 2) [NCBI Gene 39821] {aka CG4689, CG4877, Dmel\CG4877, dRAF2}, peo (pendolino) [NCBI Gene 47272] {aka CG10536, CG46338, Dmel\CG46338, Ft1, cbx, pen}, Alp4 (Alkaline phosphatase 4) [NCBI Gene 43671] {aka Aph-4, CG1462, Dmel\CG1462, aph-4, l(3)07028, pMY51}, Sfmbt (Scm-related gene containing four mbt domains) [NCBI Gene 34709] {aka CG16975, Dmel\CG16975, dSFMBT, dSfmbt}, His3:CG33854 (histone H3) [NCBI Gene 3772191] {aka CG33854, Dmel\CG33854}, Antp (Antennapedia) [NCBI Gene 40835] {aka 3.4, ANT-C, ANT-P, ANTC, Ant, AntP1}, Hsp70Bb (Heat shock protein 70 Bb) [NCBI Gene 48582] {aka Bb, CG31359, DMHSP7D1, Dm-hsp70, Dmel\CG31359, HSP70}, Ulp1 (Ulp1) [NCBI Gene 32910] {aka BcDNA:GH02751, CG12359, DmUlp1, Dmel\CG12359}, His3:CG33863 (histone H3) [NCBI Gene 3772173] {aka CG33863, Dmel\CG33863}, Ppb (Photophobe) [NCBI Gene 252324], Myc (Myc) [NCBI Gene 31310] {aka CG10798, D-Myc, DM, DMYc, Diminutive, Dm}, Polr2F (RNA polymerase II, I and III subunit F) [NCBI Gene 48312] {aka BcDNA:RH21608, CG1163, Dm6, Dmel\CG1163, H5, Pol II}, l(3)73Ah (lethal (3) 73Ah) [NCBI Gene 48903] {aka CG4195, Dmel\CG4195, I(3)73Ah, l(3)02540, l(3)133.18}, Pcgf3 (polycomb group ring finger 3) [NCBI Gene 69587] {aka 2310035N15Rik, D630042K08Rik, DONG1, E430039C14, RNF3A, Rnf3}, HP1c (Heterochromatin Protein 1c) [NCBI Gene 42696] {aka CG6990, Dmel\CG6990, HP1}, Ubi-p5E (Ubiquitin-5E) [NCBI Gene 326237] {aka CG18282, CG32744, CR32744, DmUb, DmUbi-p5E, Dmel\CG32744}, Abd-B (Abdominal B) [NCBI Gene 47763] {aka 9, ABDB, Abd B, Abd0B, AbdB, AbdB(CA)[[26]]}, tay (tay bridge) [NCBI Gene 32547] {aka CG9056, Dmel\CG9056, XI, dAUTS2, l(1)13Ff, l(1)14Ac}, His2A:CG33853 (histone H2A) [NCBI Gene 3772346] {aka CG33853, Dmel\CG33853}, Ras85D (Ras oncogene at 85D) [NCBI Gene 41140] {aka C-ras1, CG9375, D-Ras, D-Ras1, D-ras-1, D-ras1}, feo (fascetto) [NCBI Gene 32015] {aka CG11207, Dmel\CG11207, EA86, Feo1, PRC1, Q54}, Pc (Polycomb) [NCBI Gene 40358] {aka CG32443, CG7618, DmPc, Dmel\CG32443, Pc-G, PcG}, MtnA (Metallothionein A) [NCBI Gene 41202] {aka BcDNA:GH18460, CG9470, Dmel\CG9470, DrosMtn, MT, MTA}, Prc1 (protein regulator of cytokinesis 1) [NCBI Gene 233406] {aka D7Ertd348e}, His2Av (Histone H2A variant) [NCBI Gene 43229] {aka *i H2av, 5499, CG5499, Dmel\CG5499, H2A, H2A.F/Z}, hrp (hyperpolarizing receptor potential) [NCBI Gene 43883], Vsx2 (Visual system homeobox 2) [NCBI Gene 31469] {aka CG15781, CG15782, CG15783, CG33980, Chx2, DChx2}, EndoA (Endophilin A) [NCBI Gene 42265] {aka CG14296, D-endo, D-endoA, Dendo-A, Dmel\CG14296, Endo}, RpL32 (Ribosomal protein L32) [NCBI Gene 43573] {aka 143250_at, BcDNA:RH03940, CG7939, Dmel\CG7939, L32, L32e}, pros (prospero) [NCBI Gene 41363] {aka 0244/09, 0320/10, 0441/16, 0451/09, 0563/18, 0585/13}, Ubx (Ultrabithorax) [NCBI Gene 42034] {aka BX-C, Bxl, CG10388, Cbx, DUbx, Dm Ubx}, Kdm2 (Lysine demethylase 2) [NCBI Gene 41090] {aka CG11033, Dmel\CG11033, FBXL19, JHDM1, dKDM2, dKdm2}, Sce (Sex combs extra) [NCBI Gene 43327] {aka CG5595, DRING, Ding, Dmel\CG5595, Dring, RING}, RYBP (Ring and YY1 Binding Protein) [NCBI Gene 37601] {aka CG12190, Dmel\CG12190, dRYBP, drybp}
- **Diseases:** locomotion (MESH:D020233), hypoxia (MESH:D000860), female sterility (MESH:D007247), sensory impairment (MESH:D012678), behavioral abnormalities (MESH:D001523), developmental delay (MESH:D002658)
- **Chemicals:** Tb (MESH:D013725), TRIzol (MESH:C411644), BS3 (MESH:C035760), water (MESH:D014867), phenol (MESH:D019800), Sb (MESH:D000965), glycine (MESH:D005998), ethanol (MESH:D000431), copper (MESH:D003300), SDS (MESH:D012967), DTT (MESH:D004229), CaCl2 (MESH:D002122), oxygen (MESH:D010100), NaCl (MESH:D012965), DOC (MESH:D003840), TE (MESH:D013691), MgCl2 (MESH:D015636), streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), agar (MESH:D000362), bromophenol blue (MESH:D001978), nitrogen (MESH:D009584), EDTA (MESH:D004492), NP-40 (MESH:C010615), Sepharose (MESH:D012685), KOH (MESH:C029943), sucrose (MESH:D013395), chloroform (MESH:D002725), EGTA (MESH:D004533), ATP (MESH:D000255), formaldehyde (MESH:D005557), EMS (MESH:D005020), PBS (MESH:D007854), Tween (MESH:D011136), KCl (MESH:D011189), Hepes (MESH:D006531), sodium phosphate (MESH:C018279), penicillin (MESH:D010406), glycerol (MESH:D005990), CuSO4 (MESH:D019327), aluminum (MESH:D000535), Na-hypochlorite (-), acetone (MESH:D000096), sodium hypochlorite (MESH:D012973), Ser (MESH:D012694), n-heptane (MESH:C028618), phenylmethylsulfonyl fluoride (MESH:D010664)
- **Species:** Malus domestica (apple, species) [taxon 3750], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Caenorhabditis elegans (species) [taxon 6239], Mus musculus (house mouse, species) [taxon 10090], Drosophila melanogaster (fruit fly, species) [taxon 7227], Diptera (flies, order) [taxon 7147], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** C to E, I48A, D to F, lysine-to-arginine substitutions at positions 117
- **Cell lines:** Sce-KO66 — Homo sapiens (Human), Acatalasemia, Finite cell line (CVCL_JB81), ZH-51D — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_JZ64), Sce-KO63-2 — Homo sapiens (Human), Citrullinemia type I, Finite cell line (CVCL_3301)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12965321/full.md

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Source: https://tomesphere.com/paper/PMC12965321