# Structural basis of diadinoxanthin-Chl a/b–binding proteins in the photosystem I supercomplex of Euglena gracilis

**Authors:** Tianyu Bai, Zhiyuan Mao, Dapeng Sun, Yang Tang, Ziqiu Lu, Fei Ma, Bingxin Ma, Jinghua Chen, Weiwei Wang, Yuelin Li, Shufang Liu, Yi Yang, Yumei Wang, Lirong Tian

PMC · DOI: 10.1126/sciadv.aea5561 · 2026-03-06

## TL;DR

This study reveals the high-resolution structure of a photosystem I complex in Euglena gracilis, showing how it evolved through secondary endosymbiosis.

## Contribution

The paper presents the first detailed structure of the PSI-LHCI supercomplex in E. gracilis, highlighting unique pigment-binding features and evolutionary adaptations.

## Key findings

- The PSI-LHCI supercomplex has 8 core subunits and 16 LHCIs arranged in a two-layered configuration.
- The LHCIs include 4 diadinoxanthin-Chl a/b-binding and 12 diadinoxanthin-Chl a-binding antennae.
- The structure provides insights into light-harvesting mechanisms and evolutionary changes in green-lineage organisms.

## Abstract

Euglena gracilis is a phototrophic flagellate that has evolved through secondary endosymbiotic events and belongs to green-lineage organisms. We report a unique structure of photosystem I-light harvesting complex I (PSI-LHCI) supercomplex from E. gracilis at a 2.23-angstrom resolution by cryo–electron microscopy. The supercomplex is composed of 8 core subunits and 16 LHCIs and exhibits distinctive structural features compared to its counterparts in green algae and plants. The LHCI subunits encircle the core complex, forming a two-layered arrangement that comprises six pairs of tightly packed heterodimers. Specifically, the 16 LHCIs consist of 4 diadinoxanthin-chlorophyll (Chl) a/b–binding antennae (Lhcbm) and 12 diadinoxanthin-Chl a–binding antennae (Lhca), and they exhibit characteristic pigment compositions combining features of green- and red-lineage organisms. These findings provide a robust structural foundation for elucidating the mechanisms of light harvesting and energy transfer as well as insights into the evolutionary changes of green-lineage PSI-LHCI.

The high-resolution Euglena PSI structure reveals how diverse two-layered antennas adapt to secondary endosymbiotic evolution.

## Linked entities

- **Proteins:** lhcA (photosystem I light harvesting protein)
- **Chemicals:** diadinoxanthin (PubChem CID 6449888), chlorophyll a (PubChem CID 6266510)
- **Species:** Euglena gracilis (taxon 3039)

## Full-text entities

- **Genes:** PsaA [NCBI Gene 807489], LHCB5 (light harvesting complex of photosystem II 5) [NCBI Gene 826626] {aka CHLOROPHYLL PROTEIN 26, CP 26, CP26, F24G24.140, F24G24_140, light harvesting complex of photosystem II 5}, PsaJ [NCBI Gene 807523], PsaM [NCBI Gene 807495], PsaB [NCBI Gene 807516], PsaJ [NCBI Gene 2716958], LHCB2.3 (photosystem II light harvesting complex protein 2.3) [NCBI Gene 822391] {aka LHCB2, LHCB2.4, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3}
- **Chemicals:** magnesium (MESH:D008274), Chl b (MESH:C037184), quinone (MESH:C004532), hydrogen (MESH:D006859), lipid (MESH:D008055), sucrose (MESH:D013395), PQNs (MESH:D010837), CO2 (MESH:D002245), diatoxanthin (MESH:C103105), Lut (MESH:D014975), acetone (MESH:D000096), urea (MESH:D014508), plastoquinone (MESH:D010971), betaine (MESH:D001622), P700 (MESH:C001785), violaxanthin (MESH:C005613), Chl a618 (-), porphyrin (MESH:D011166), Ddx (MESH:C033808), b (MESH:D001895), dithiothreitol (MESH:D004229), CaCl2 (MESH:D002122), xenon (MESH:D014978), SDS (MESH:D012967), ethane (MESH:D004980), water (MESH:D014867), E (MESH:D004540), Car (MESH:D002338), Coomassie Brilliant Blue (MESH:C004692), Chl (MESH:D002734), polyacrylamide (MESH:C016679), carbon (MESH:D002244), graphene oxide (MESH:C000628730), n-dodecyl-beta-D-maltoside (MESH:C040358), N (MESH:D009584), EDTA (MESH:D004492), sugars (MESH:D000073893), lithium lauryl sulfate (MESH:C028913), O (MESH:D010100), MgCl2 (MESH:D015636), NaCl (MESH:D012965), Au (MESH:D006046)
- **Species:** Bryophyta (mosses, clade) [taxon 3208], PX clade (clade) [taxon 569578], Rhodophyta (red algae, phylum) [taxon 2763], Dunaliella salina (species) [taxon 3046], Chlorophyta (green algae, phylum) [taxon 3041], Zea mays (maize, species) [taxon 4577], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Euglenida (euglenids, class) [taxon 3035], Chlamydomonas reinhardtii (species) [taxon 3055], Euglena gracilis (species) [taxon 3039], Euglena viridis (species) [taxon 3040], Euglena mutabilis (species) [taxon 38275], Euglena clara (species) [taxon 215708], Acaryochloris marina (species) [taxon 155978], Physcomitrium patens (species) [taxon 3218], Ostreococcus tauri (species) [taxon 70448], Cyanobacterium (genus) [taxon 102234]

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12965295/full.md

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Source: https://tomesphere.com/paper/PMC12965295