# Direct observation of Notch signaling–induced transcription hubs mediating gene-expression responses

**Authors:** Carmen Santa-Cruz Mateos, Charalambos Roussos, F. Javier de Haro Arbona, Julia Falo-Sanjuan, Sarah Bray

PMC · DOI: 10.1126/sciadv.aea5664 · 2026-03-06

## TL;DR

The study shows that Notch signaling creates transcription hubs that help cells respond to signals by controlling gene expression.

## Contribution

The paper provides direct evidence that Notch signaling induces transcription hubs that influence gene-expression responses.

## Key findings

- Notch signaling leads to the formation of transcription hubs containing the coactivator Mastermind.
- Transcription hub formation precedes and correlates with gene transcription dynamics.
- Altering signaling levels affects both hub intensity and transcription profiles.

## Abstract

Developmental decisions rely on cells making accurate transcriptional responses to signals they receive, as with Notch pathway activity. Local condensates or transcription factor hubs are a proposed mechanism for facilitating gene activation by nuclear complexes. To investigate their importance in endogenous Notch signaling, we deployed multicolor live imaging to measure Notch transcription-complex enrichment at a target gene locus in combination with the transcription dynamics. The coactivator Mastermind (Mam) was present in signaling-dependent nuclear foci during Notch active developmental stages. Tracking these highly dynamic Mam hubs together with transcription in the same nucleus revealed that their appearance precedes and correlates with the profile of transcription and becomes stabilized if transcription is inhibited. Manipulations to signaling levels had concordant effects on hub intensities and transcription profiles, altering their probability and amplitude. Together, the results argue that signaling induces the formation of transcription hubs whose properties are instrumental in the quantitative gene-expression response to Notch activation.

Multicolor live imaging reveals Notch transcription-complex enrichment at a gene locus, which precedes and informs transcription.

## Linked entities

- **Genes:** Notch (neurogenic locus notch homolog) [NCBI Gene 100616083], maml1.L (mastermind like transcriptional coactivator 1 L homeolog) [NCBI Gene 394224]

## Full-text entities

- **Genes:** E(spl)m7-HLH (Enhancer of split m7, helix-loop-helix) [NCBI Gene 43160] {aka CG8361, Dmel\CG8361, E(SPL)m7, E(spl) m7, E(spl)-M7, E(spl)-m7}, N (Notch) [NCBI Gene 31293] {aka 1.1, 16-178, 16-55, Ax, CG3936, CT13012}, E(spl)mbeta-HLH (Enhancer of split mbeta, helix-loop-helix) [NCBI Gene 43152] {aka CG14548, Dm-mA, Dmel\CG14548, E(Spl) HLH-Mbeta, E(Spl)mbeta, E(spl)}, His2Av (Histone H2A variant) [NCBI Gene 43229] {aka *i H2av, 5499, CG5499, Dmel\CG5499, H2A, H2A.F/Z}, nej (nejire) [NCBI Gene 43856] {aka CBP, CBP/p300, CBP_, CG15319, CG15321, Cbp}, zld (zelda) [NCBI Gene 32994] {aka CG12701, Dmel\CG12701, EP1344, VFL, Vfl, Zelda}, hpo (hippo) [NCBI Gene 37247] {aka CG11228, Dmel\CG11228, Hippo, Hpo/Wts, MST, MST2}, lin-12 (lin-12/Notch intracellular domain) [NCBI Gene 176282], mam (mastermind) [NCBI Gene 36555] {aka CG8118, DMam, Dm0064, Dmel\CG8118, MamH, N-2G}, Polr2A (RNA polymerase II subunit A) [NCBI Gene 32100] {aka 5, 8WG16, CG1554, CTD, DmCTD, Dmel\CG1554}, E(spl)m3-HLH (Enhancer of split m3, helix-loop-helix) [NCBI Gene 43156] {aka CG8346, Dmel\CG8346, E(Spl)-HLH-m3, E(spl)-C, E(spl)-m3, E(spl)C}, up (upheld) [NCBI Gene 32314] {aka BcDNA:LD08591, CG7107, DmTpnT, Dmel\CG7107, TNT, Tn-T}, Spl (Splayed) [NCBI Gene 45932], Hsp83 (Heat shock protein 83) [NCBI Gene 38389] {aka 143198_at, 83, 83K HSP, CG1242, DMHSP82, DmHsp83}, sls (sallimus) [NCBI Gene 44013] {aka 0020/01, CG18242, CG18245, CG18857, CG1915, CT41299}, par (paralog) [NCBI Gene 5656961], Su(H) (Suppressor of Hairless) [NCBI Gene 34881] {aka BG:DS00929.10, C, CBF1, CG3497, CSL, D}, bcd (bicoid) [NCBI Gene 40830] {aka BG:DS00276.7, Bicoid, CG1034, Dm-Bcd, Dmel\CG1034, bic}, Sox14 (Sox box protein 14) [NCBI Gene 37822] {aka CG17263, CG3090, DSox-14, DSox14, DSox60B, Dmel\CG3090}
- **Diseases:** ATS (MESH:D050030), ATSs (MESH:D009371), cancers (MESH:D009369)
- **Chemicals:** triptolide (MESH:C001899), ecdysone (MESH:D004440), formaldehyde (MESH:D005557), glucose (MESH:D005947), 4',6-diamidino-2-phenylindole (MESH:C007293), DMSO (MESH:D004121), argon (MESH:D001128), 5,6-dichloro-1-beta-d-ribofuranosylbenzimidazole (-), penicillin (MESH:D010406), oil (MESH:D009821), methylparaben (MESH:C015358), insulin (MESH:D007328), methanol (MESH:D000432), Triton X-100 (MESH:D017830), agar (MESH:D000362), streptomycin (MESH:D013307), compound E (MESH:D003348)
- **Species:** Drosophila melanogaster (fruit fly, species) [taxon 7227], Caenorhabditis elegans (species) [taxon 6239], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Cell lines:** S2J. — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), N55e11/ — Opodiphthera eucalypti (Emperor gum moth), Spontaneously immortalized cell line (CVCL_Z109), BL-7280 — Homo sapiens (Human), Hyperlysinemia, Finite cell line (CVCL_4T30)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12965292/full.md

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Source: https://tomesphere.com/paper/PMC12965292