# CUL3LRB E3 ubiquitin ligases control thermosensory growth in Arabidopsis by differentially regulating HY5 and PIF4 protein stability

**Authors:** Chirag Singhal, Gouranga Upadhyaya, Mohan Singh Rajkumar, Annayasa Modak, Vishmita Sethi, Shivani Singh, Devyan Das, Mukesh Jain, Sreeramaiah N. Gangappa

PMC · DOI: 10.1126/sciadv.aec7817 · 2026-03-06

## TL;DR

This study shows how LRB proteins help plants sense and respond to warm temperatures by controlling key growth regulators.

## Contribution

The paper reveals a dual mechanism by which LRBs regulate PIF4 and HY5 to control thermosensory growth in plants.

## Key findings

- LRB mutants show reduced or no response to warm temperatures.
- LRBs stabilize PIF4 and degrade HY5 to promote thermomorphogenesis.
- Transcriptomic analysis links LRBs to warm temperature–induced gene expression.

## Abstract

Rising temperatures from global warming harm plant health, reducing crop yields and threatening food security. Understanding the impact of climate change on plant health is crucial for developing climate-resilient crops. Here, we report LIGHT-RESPONSE BRIC-A-BRACK/TRAMTRACK/BROAD (LRB) E3 ubiquitin ligases as essential components of thermosensory growth in Arabidopsis. Single lrb mutants show subtle to moderate warm temperature insensitivity, while lrb12 double and lrb123 triple mutants exhibit complete insensitivity. Whole-genome transcriptomic analysis revealed that LRBs are crucial for the warm temperature–induced expression of genes involved in growth and hormone signaling. Genetic and gene expression analyses confirm that the LRBs are essential for PHYTOCHROME INTERACTING FACTOR 4 (PIF4)–mediated thermomorphogenesis. LRBs physically associate with PIF4, likely preventing its degradation and maintaining optimal protein levels. Concurrently, LRBs ubiquitinate and degrade the key repressor ELONGATED HYPOCOTYL5 during the daytime, thereby enhancing PIF4 signaling. Together, this study uncovers a dual mechanism by which LRBs potentiate thermosensory growth in response to warm ambient temperatures.

LRBs potentiate thermosensory growth by inhibiting HY5 activity while promoting PIF4 function.

## Linked entities

- **Genes:** l(3)89Ee (lethal (3) 89Ee) [NCBI Gene 49072], PIF4 (phytochrome interacting factor 4) [NCBI Gene 818903], RNY5 (RNA, Ro60-associated Y5) [NCBI Gene 6090]
- **Proteins:** l(3)89Ee (lethal (3) 89Ee), PIF4 (phytochrome interacting factor 4), RNY5 (RNA, Ro60-associated Y5)
- **Species:** Arabidopsis (taxon 3701)

## Full-text entities

- **Genes:** PRE1 (proteasome core particle subunit beta 4) [NCBI Gene 856731], CUL3 (cullin 3) [NCBI Gene 839226] {aka ATCUL3, ATCUL3A, CUL3A, T24P13.25, cullin 3, cullin 3A}, LRB3 (BTB/POZ/Kelch-associated protein) [NCBI Gene 828156] {aka F2N1.11, F2N1_11, light-response BTB 3}, UBA1 (ubiquitin like modifier activating enzyme 1) [NCBI Gene 7317] {aka A1S9, A1S9T, A1ST, AMCX1, CFAP124, GXP1}, NDC80 (kinetochore-associated Ndc80 complex subunit NDC80) [NCBI Gene 854662] {aka HEC1, TID3}, PHYD (phytochrome D) [NCBI Gene 827319] {aka DL4165C, FCAALL.323, PHYTOCHROME D, phytochrome D}, IPP (intracisternal A particle-promoted polypeptide) [NCBI Gene 3652] {aka KLHL27}, COP1 (coatomer subunit alpha) [NCBI Gene 851410] {aka RET1, SEC33, SOO1}, CRY1 (cryptochrome 1) [NCBI Gene 826470] {aka ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRYPTOCHROME 1 APOPROTEIN (BLUE LIGHT PHOTORECEPTOR, ELONGATED HYPOCOTYL 4, HY4}, CRY2 (cryptochrome 2) [NCBI Gene 839529] {aka AT-PHH1, ATCRY2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA}, HRT1 (SCF ubiquitin ligase complex subunit HRT1) [NCBI Gene 853986] {aka HRT2, RBX1, ROC1}, HY5 (Basic-leucine zipper (bZIP) transcription factor family protein) [NCBI Gene 830996] {aka BZIP TRANSCRIPTION FACTOR HY5, ELONGATED HYPOCOTYL 5, F2I11.150, F2I11_150, REVERSAL OF THE DET PHENOTYPE 5, TED 5}, UBA7 (ubiquitin like modifier activating enzyme 7) [NCBI Gene 7318] {aka D8, UBA1B, UBE1L, UBE2, UBE7}, PHYB (phytochrome B) [NCBI Gene 816394] {aka HY3, MSF3.17, MSF3_17, OOP1, OUT OF PHASE 1, PHYTOCHROME B}, CAB1 (pantothenate kinase) [NCBI Gene 852144], LRB1 (BTB/POZ/Kelch-associated protein) [NCBI Gene 819234] {aka T3F17.9, light-response BTB 1}, GAL4 (galactose-responsive transcription factor GAL4) [NCBI Gene 855828] {aka GAL81}, TTG1 (Transducin/WD40 repeat-like superfamily protein) [NCBI Gene 832523] {aka ATTTG1, K18P6.4, K18P6_4, TRANSPARENT TESTA GLABRA 1, TTG, UNARMED 23}, BAK1 (BRI1-associated receptor kinase) [NCBI Gene 829480] {aka ATBAK1, ATSERK3, BRI1-associated receptor kinase, ELG, ELONGATED, F17M5.190}, UBE2D3 (ubiquitin conjugating enzyme E2 D3) [NCBI Gene 7323] {aka E2(17)KB3, UBC4/5, UBCH5C}, PIF4 (phytochrome interacting factor 4) [NCBI Gene 818903] {aka AtPIF4, MFL8.13, MFL8_13, SRL2, phytochrome interacting factor 4}, PPA1 (inorganic pyrophosphatase 1) [NCBI Gene 5464] {aka HEL-S-66p, IOPPP, PP, PP1, SID6-8061}, POB1 (POZ/BTB containin G-protein 1) [NCBI Gene 825333] {aka ATPOB1, F15G16.4, LRB2, POZ/BTB CONTAINING-PROTEIN ATPOB1, POZ/BTB containin G-protein 1, light-response BTB 2}, DET1 (acid phosphatase DET1) [NCBI Gene 851621], FRI (FRIGIDA-like protein) [NCBI Gene 828044] {aka F6N23.25, F6N23_25, FLA, FLOWERING LOCUS A, FRIGIDA, REDUCED STEM BRANCHING 7}, ABCG33 (pleiotropic drug resistance 5) [NCBI Gene 818305] {aka ATP-binding cassette G33, ATPDR5, F3G5.7, F3G5_7, PDR5, PLEIOTROPIC DRUG RESISTANCE 5}, PRE5 (proteasome core particle subunit alpha 6) [NCBI Gene 855362]
- **Diseases:** AD (OMIM:612348)
- **Chemicals:** MG132 (MESH:C072553), gibberellin (MESH:D005875), iodoacetamide (MESH:D007460), Leu (MESH:D007930), H2O (MESH:D014867), chloral hydrate (MESH:D002697), EtOH (MESH:D000431), kanamycin (MESH:D007612), DTT (MESH:D004229), Laemmli buffer (MESH:C088816), BR (MESH:D060406), MES (MESH:C004550), CaCl2 (MESH:D002122), adenine (MESH:D000225), SDS (MESH:D012967), HCOOH (MESH:C030544), gibberellic acid (MESH:C007842), vermiculite (MESH:C003760), phosphate (MESH:D010710), BRs (MESH:D001966), MgCl2 (MESH:D015636), methanol (MESH:D000432), NaCl (MESH:D012965), Pr (MESH:D011221), acetonitrile (MESH:C032159), Triton X-100 (MESH:D017830), agar (MESH:D000362), polyacrylamide (MESH:C016679), Nonidet P-40 (MESH:C010615), Ade (MESH:C060154), EDTA (MESH:D004492), HIS (MESH:D006639), bromophenol blue (MESH:D001978), N2 (MESH:D009584), sucrose (MESH:D013395), perlite (MESH:C003076), Na2CO3 (MESH:C005686), Silwet L-77 (MESH:C473569), agarose (MESH:D012685), aniline blue (MESH:C017006), acetosyringone (MESH:C051667), ampicillin (MESH:D000667), ATP (MESH:D000255), glutathione (MESH:D005978), mannitol (MESH:D008353), d-glucose (MESH:D005947), formaldehyde (MESH:D005557), DMSO (MESH:D004121), TOPO (MESH:C044965), 4',6-diamidino-2-phenylindole (MESH:C007293), Auxin (MESH:D007210), alcohol (MESH:D000438), polyvinylidene difluoride (MESH:C024865), CHX (MESH:D003513), Trp (MESH:D014364), pepstatin (MESH:C031375), Picloram (MESH:D010846), indole-3-acetic acid (MESH:C030737), glycerol (MESH:D005990), charcoal (MESH:D002606)
- **Species:** Tomato bushy stunt virus (no rank) [taxon 12145], Escherichia coli (E. coli, species) [taxon 562], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Mus musculus (house mouse, species) [taxon 10090], Agrobacterium tumefaciens (species) [taxon 358], Allium cepa (onion, species) [taxon 4679], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** GV3101 — Manduca sexta (Tobacco hawkmoth), Spontaneously immortalized cell line (CVCL_A8Z7), Col-0 — Homo sapiens (Human), Familial hypertrophic cardiomyopathy type 26, Induced pluripotent stem cell (CVCL_A6XE), BL21 (DE3 — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), TOP10 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_TT29), Col- — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_A6IS)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12965291/full.md

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Source: https://tomesphere.com/paper/PMC12965291