Identification and validation of biomarkers associated with lactic acid metabolism in diabetic nephropathy

TL;DR

This study identifies PTGS2 and NFE2L2 as key biomarkers linked to lactic acid metabolism in diabetic nephropathy, validated through bioinformatics and clinical testing.

Contribution

The study introduces PTGS2 and NFE2L2 as novel biomarkers for diabetic nephropathy associated with lactic acid metabolism.

Findings

PTGS2 and NFE2L2 showed significantly elevated expression in DN clinical samples.

Both biomarkers correlated with immune cell infiltration and key signaling pathways like hypoxia and IL2 STAT5.

Molecular docking confirmed high-affinity drug interactions for NFE2L2 and PTGS2.

Abstract

Previous studies have demonstrated a close association between diabetic nephropathy (DN) and lactic acid metabolism; however, the underlying mechanisms remain unclear. This study aimed to investigate the role of lactic acid metabolism-related biomarkers in the pathogenesis of DN.

The DN training and validation datasets were obtained from public databases, while lactic acid metabolism-related genes (LRGs) were sourced from the literature. Using a comprehensive bioinformatics approach, we screened for potential biomarkers. Subsequent analyses included nomogram construction, functional enrichment, immune cell infiltration profiling, regulatory network mapping, drug target prediction, and molecular docking to elucidate the biomarkers’ roles in DN pathogenesis. Finally, reverse transcription quantitative polymerase chain reaction (RT-qPCR) was performed to validate biomarker expression levels in clinical samples.

Through a comprehensive analysis of bioinformatics methods, we identified two biomarkers—PTGS2 and NFE2L2—as significant candidates in DN. The nomogram demonstrated robust predictive efficacy, validating their utility. NFE2L2 and PTGS2 were positively correlated with the five signal pathways, such as hypoxia and IL2 STAT5 signaling. Both PTGS2 and NFE2L2 had the highest positive correlation with T follicular helper cells (correlation coefficient (cor) = 0.49, p < 0.01, and cor = 0.54, p < 0.01). Two biomarkers predicted multiple miRNAs and transcription factors (TFs), such as miR-144-3p, GATA2, and GATA3. Drug-target analysis highlighted high-affinity interactions for NFE2L2 -lagascatriol and PTGS2 -cimicoxib, further supported by molecular docking. Finally, RT-qPCR confirmed significantly elevated expression of PTGS2 and NFE2L2 in DN samples compared to controls (p < 0.05), aligning with bioinformatics predictions.

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