# Mechanisms and Therapeutic Strategies to Overcome Immune Checkpoint Inhibitor Resistance in Melanoma, Head and Neck, and Triple-Negative Breast Cancers

**Authors:** Iryna Voloshyna, Apoorvi Tyagi, Stanzin Idga, Nicole Wang, Tazrif Amin, Madonna Hanna, Adil Mukhtar, Francesca Torres, Farah Kabir, Dominic Florian, Chloe Wang, Yury Patskovsky, Michelle Krogsgaard

PMC · DOI: 10.33696/immunology.7.235 · 2026-03-07

## TL;DR

This paper reviews why some cancers resist immunotherapy and explores new strategies to improve treatment outcomes for melanoma, head and neck, and breast cancers.

## Contribution

The paper provides a comprehensive overview of shared and cancer-specific resistance mechanisms and emerging therapeutic strategies for ICI-resistant cancers.

## Key findings

- Melanoma responds well to ICIs but still faces resistance challenges.
- HNSCC and TNBC show limited ICI efficacy due to immunosuppressive environments.
- Combination therapies and neoantigen vaccines are promising to overcome resistance.

## Abstract

Immunotherapy, particularly immune checkpoint inhibitors (ICIs), has revolutionized cancer treatment by harnessing the host immune system to target malignancies. Melanoma, head and neck squamous cell carcinoma (HNSCC), and triple-negative breast cancer (TNBC) were among the first solid tumors to gain regulatory approval for ICIs due to their immunogenicity and unmet clinical needs. Melanoma exemplifies the success of ICI therapy, with durable responses driven by its high mutation burden and neoantigen landscape, yet both primary and acquired resistance remain major challenges. In contrast, HNSCC demonstrates clinically meaningful but modest responses in the context of a highly immunosuppressive tumor microenvironment, while TNBC derives limited benefit from ICI, often requiring combination strategies to achieve efficacy. Resistance to ICIs arises from complex tumor-intrinsic, microenvironmental, and systemic mechanisms that collectively undermine effective anti-tumor immunity. This review highlights both shared and cancer-specific mechanisms of ICI resistance across melanoma, TNBC and HNSCC. We also discuss emerging strategies, including combination therapies, neoantigen-based vaccines, adoptive T cell therapies, and precision oncology approaches, to overcome resistance and improve clinical outcomes. Together, these insights provide a framework for optimizing immunotherapy and advance durable benefit in these challenging malignancies.

## Linked entities

- **Diseases:** melanoma (MONDO:0005105), head and neck squamous cell carcinoma (MONDO:0010150), triple-negative breast cancer (MONDO:0005494)

## Full-text entities

- **Genes:** CCL28 (C-C motif chemokine ligand 28) [NCBI Gene 56477] {aka CCK1, MEC, SCYA28}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, NECTIN2 (nectin cell adhesion molecule 2) [NCBI Gene 5819] {aka CD112, HVEB, PRR2, PVRL2, PVRR2}, LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, JAK1 (Janus kinase 1) [NCBI Gene 3716] {aka AIIDE, JAK1A, JAK1B, JTK3}, TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 201633] {aka VSIG9, VSTM3, WUCAM}, TACSTD2 (tumor associated calcium signal transducer 2) [NCBI Gene 4070] {aka EGP-1, EGP1, GA733-1, GA7331, GP50, M1S1}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, HLA-G (major histocompatibility complex, class I, G) [NCBI Gene 3135] {aka MHC-G}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, HMGB1 (high mobility group box 1) [NCBI Gene 3146] {aka HMG-1, HMG1, HMG3, SBP-1}, JAK2 (Janus kinase 2) [NCBI Gene 3717] {aka JTK10}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, CCL4 (C-C motif chemokine ligand 4) [NCBI Gene 6351] {aka ACT2, AT744.1, G-26, HC21, LAG-1, LAG1}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, PI3K [NCBI Gene 107795370], BAG6 (BAG cochaperone 6) [NCBI Gene 7917] {aka BAG-6, BAT3, D6S52E, G3}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, CXCL12 (C-X-C motif chemokine ligand 12) [NCBI Gene 6387] {aka IRH, PBSF, SCYB12, SDF1, TLSF, TPAR1}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, ITGAE (integrin subunit alpha E) [NCBI Gene 3682] {aka CD103, HUMINAE}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, PVR (PVR cell adhesion molecule) [NCBI Gene 5817] {aka CD155, HVED, NECL5, Necl-5, PVS, TAGE4}, Adipoq (adiponectin, C1Q and collagen domain containing) [NCBI Gene 11450] {aka 30kDa, APN, Acdc, Acrp30, Ad, Adid}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, CEACAM1 (CEA cell adhesion molecule 1) [NCBI Gene 634] {aka BGP, BGP1, BGPI}, VSIR (V-set immunoregulatory receptor) [NCBI Gene 64115] {aka B7-H5, B7H5, C10orf54, DD1alpha, Dies1, GI24}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, B2M (beta-2-microglobulin) [NCBI Gene 567] {aka AMYLD6, IMD43, MHC1D4}, FGL1 (fibrinogen like 1) [NCBI Gene 2267] {aka HFREP1, HP-041, HPS, LFIRE-1, LFIRE1}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, CLEC4G (C-type lectin domain family 4 member G) [NCBI Gene 339390] {aka DTTR431, LP2698, LSECtin, UNQ431}, LGALS3 (galectin 3) [NCBI Gene 3958] {aka CBP35, GAL3, GALBP, GALIG, L31, LGALS2}, Lep (leptin) [NCBI Gene 16846] {aka ob, obese}, LGALS9 (galectin 9) [NCBI Gene 3965] {aka HUAT, LGALS9A}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, TLR9 (toll like receptor 9) [NCBI Gene 54106] {aka CD289}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, IL6R (interleukin 6 receptor) [NCBI Gene 3570] {aka CD126, HIES5, IL-1Ra, IL-6R, IL-6R-1, IL-6RA}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}
- **Diseases:** Dysphagia (MESH:D003680), metastasis (MESH:D009362), chronic infections (MESH:D000088562), viral infection (MESH:D014777), malnutrition (MESH:D044342), immune dysfunction (MESH:D007154), insulin resistance (MESH:D007333), cytotoxic (MESH:D064420), weight loss (MESH:D015431), mucositis (MESH:D052016), breast cancer (MESH:D001943), Head and Neck, and Triple-Negative Breast Cancers (MESH:D064726), cutaneous melanoma (MESH:C562393), acral and uveal melanomas (MESH:C536494), solid (MESH:D018250), prostate, and pancreatic cancers (MESH:D011471), Melanoma (MESH:D008545), fibrosis (MESH:D005355), sarcopenia (MESH:D055948), Chronic inflammation (MESH:D007249), Tumors (MESH:D009369), Microbiome dysbiosis (MESH:D064806), metastatic disease (MESH:D000092182), hypoxic (MESH:D002534), obesity (MESH:D009765), tumorigenesis (MESH:D063646), cachexia (MESH:D002100), HPV+ (MESH:D030361), Hypoxia (MESH:D000860), frailty (MESH:D000073496), non-small cell lung carcinoma (MESH:D002289), HNSCC (MESH:D000077195)
- **Chemicals:** Epirubicin (MESH:D015251), CheckMate-141 (-), Pembrolizumab (MESH:C582435), phosphatidylserine (MESH:D010718), vedolizumab (MESH:C543529), steroid (MESH:D013256), Navoximod (MESH:C000655606), sacituzumab govitecan (MESH:C000608132), Olaparib (MESH:C531550), durvalumab (MESH:C000613593), dabrafenib (MESH:C561627), taxanes (MESH:D043823), taxane (MESH:C080625), alcohol (MESH:D000438), nivolumab (MESH:D000077594), short-chain fatty acids (MESH:D005232), tremelimumab (MESH:C520704), glucose (MESH:D005947), adenosine (MESH:D000241), platinum (MESH:D010984), tocilizumab (MESH:C502936), avelumab (MESH:C000609138), anthracycline (MESH:D018943), Paclitaxel (MESH:D017239), lactate (MESH:D019344), relatlimab (MESH:C000721227), 5-FU (MESH:D005472), trametinib (MESH:C560077), atezolizumab (MESH:C000594389), MDX010 (MESH:D000074324), branched-chain amino acids (MESH:D000597), hyaluronan (MESH:D006820), infliximab (MESH:D000069285)
- **Species:** Streptococcus (genus) [taxon 1301], Homo sapiens (human, species) [taxon 9606], gut metagenome (species) [taxon 749906], Mus musculus (house mouse, species) [taxon 10090], Prevotella (genus) [taxon 838], Orthoreovirus (genus) [taxon 10882], Nicotiana tabacum (American tobacco, species) [taxon 4097]
- **Mutations:** H1047R, V600

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12965150/full.md

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Source: https://tomesphere.com/paper/PMC12965150