# PTPN1 Regulation via YBX1-PTBP1 Interaction Promotes Fibroblast Activation and Fibrotic Remodeling in the Lung

**Authors:** Huibing Liu, Cong Xia, Yingying Zhang, Yulong Gan, Lianhui Cheng, Xuqian Wang, Airu Chang, Wenyu Zhao, Bin Li, Yaxuan Wang, Yajun Li, Ivan Rosas, Juntang Yang, Guoying Yu, Lan Wang

PMC · DOI: 10.7150/ijbs.123875 · 2026-01-30

## TL;DR

This study shows how YBX1 promotes lung fibrosis by interacting with PTBP1 and regulating PTPN1, offering new therapeutic insights for idiopathic pulmonary fibrosis.

## Contribution

The novel contribution is identifying YBX1's role in promoting fibroblast activation via the PTBP1/PTPN1 axis in lung fibrosis.

## Key findings

- YBX1 overexpression enhances TGF-β1-induced fibroblast activation and ECM deposition.
- YBX1 interacts with PTBP1 and regulates PTPN1 transcription to drive fibroblast-to-myofibroblast transition.
- AAV-delivered Ybx1 shRNA reduces fibrosis markers in a murine model of lung fibrosis.

## Abstract

Idiopathic pulmonary fibrosis (IPF) is a chronic, progressive interstitial pneumonia of unknown etiology. Its pathogenesis involves complex multicellular interactions and signaling pathways, with fibroblast-to-myofibroblast transition (FMT) being critical for fibrogenesis. Although the transcription factor Y-box binding protein 1 (YBX1) regulates processes such as cell proliferation, transcription, translation, and DNA repair, its role in IPF remains undefined. Here, we demonstrate that YBX1 overexpression significantly promotes transforming growth factor-β1 (TGF-β1)-induced pulmonary FMT, leading to substantially increased extracellular matrix (ECM) deposition in primary human (PHLFs) and mouse (PMLFs) lung fibroblasts. Conversely, YBX1 inhibition markedly suppresses TGF-β1-driven aberrant fibroblast migration and activation. Mechanistically, YBX1 interacts with polypyrimidine tract-binding protein 1 (PTBP1) and binds to the protein tyrosine phosphatase nonreceptor type 1 (PTPN1) promoter to transcriptionally regulate PTPN1, thereby driving FMT. In vivo, intratracheal delivery of Ybx1-targeting shRNA via adeno-associated virus (AAV) robustly attenuates ECM deposition, hydroxyproline content, and fibrotic marker expression in a bleomycin (BLM)-induced murine fibrosis model. Our findings identify YBX1 as a promoter of lung FMT via the PTBP1/PTPN1 axis, offering mechanistic insights for the development of YBX1-targeted therapeutic strategies for IPF.

## Linked entities

- **Genes:** YBX1 (Y-box binding protein 1) [NCBI Gene 4904], PTBP1 (polypyrimidine tract binding protein 1) [NCBI Gene 5725], PTPN1 (protein tyrosine phosphatase non-receptor type 1) [NCBI Gene 5770]
- **Proteins:** PTB1 (polypyrimidine tract-binding protein 1)
- **Chemicals:** bleomycin (PubChem CID 5360373)
- **Diseases:** idiopathic pulmonary fibrosis (MONDO:0800029), pulmonary fibrosis (MONDO:0002771)
- **Species:** Homo sapiens (taxon 9606), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** PTBP1 (polypyrimidine tract binding protein 1) [NCBI Gene 5725] {aka HNRNP-I, HNRNPI, HNRPI, PTB, PTB-1, PTB-T}, Ybx1 (Y box protein 1) [NCBI Gene 22608] {aka 1700102N10Rik, EF1A, MSY1, Nsep1, YB-1, dbpB}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Col1a1 (collagen, type I, alpha 1) [NCBI Gene 12842] {aka Col1a-1, Cola-1, Cola1, Mov-13, Mov13}, Fn1 (fibronectin 1) [NCBI Gene 14268] {aka E330027I09, Fn, Fn-1}, YBX1 (Y-box binding protein 1) [NCBI Gene 4904] {aka BP-8, CBF-A, CSDA2, CSDB, DBPB, EFI-A}, Ptpn11 (protein tyrosine phosphatase, non-receptor type 11) [NCBI Gene 19247] {aka 2700084A17Rik, PTP1D, PTP2C, SAP-2, SH-PTP2, SH-PTP3}, Vim (vimentin) [NCBI Gene 22352], Ptpn1 (protein tyrosine phosphatase, non-receptor type 1) [NCBI Gene 19246] {aka PTP-1B, PTP-HA2, PTP1B}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, Ptbp1 (polypyrimidine tract binding protein 1) [NCBI Gene 19205] {aka HNRPI, PTB-1, PTB2, PTB3, PTB4, Ptb}, Acta2 (actin alpha 2, smooth muscle, aorta) [NCBI Gene 11475] {aka 0610041G09Rik, Actvs, SMAalpha, SMalphaA, a-SMA, alphaSMA}, COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277] {aka CAFYD, EDSARTH1, EDSC, OI1, OI2, OI3}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, PTPN1 (protein tyrosine phosphatase non-receptor type 1) [NCBI Gene 5770] {aka PTP1B}
- **Diseases:** respiratory distress (MESH:D012128), pulmonary scarring (MESH:D002921), interstitial lung disease (MESH:D017563), pulmonary fibrosis (MESH:D011658), dysfunction (MESH:D006331), IPF (MESH:D054990), lung cancer (MESH:D008175), dyspnea (MESH:D004417), lung FMT (MESH:D008171), cancers (MESH:D009369), weight loss (MESH:D015431), lung function (MESH:D055370), fibrotic diseases (MESH:D004194), inflammatory (MESH:D007249), fibrosis (MESH:D005355), FMT (MESH:D008579), death (MESH:D003643)
- **Chemicals:** Silver (MESH:D012834), PBS (MESH:D007854), SDS (MESH:D012967), BLM (MESH:D001761), DAB (MESH:C000469), formaldehyde (MESH:D005557), DAPI (MESH:C007293), nintedanib (MESH:C530716), glycine (MESH:D005998), tyrosine (MESH:D014443), CO2 (MESH:D002245), SYBR Green (MESH:C098022), isoflurane (MESH:D007530), paraformaldehyde (MESH:C003043), pirfenidone (MESH:C093844), IP (MESH:C041508), TritonX-100 (MESH:D017830), streptomycin (MESH:D013307), CHX (-), crystal violet (MESH:D005840), H&amp;E (MESH:D006371), penicillin (MESH:D010406), hematoxylin (MESH:D006416), Hydroxyproline (MESH:D006909)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12965075/full.md

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Source: https://tomesphere.com/paper/PMC12965075