# MYC-Mediated Functional Manifestation of IDH1 Mutations in Intrahepatic Cholangiocarcinoma Confers Sensitivity to (+)-JQ1

**Authors:** Fangyanni Wang, Xinyu Liu, Ning Zhang, Ruirui Kong

PMC · DOI: 10.7150/ijbs.123085 · 2026-01-30

## TL;DR

This study shows that MYC overexpression in IDH1-mutant intrahepatic cholangiocarcinoma worsens outcomes but makes tumors sensitive to the MYC inhibitor (+)-JQ1.

## Contribution

The study identifies MYC as a driver of IDH1-mutant ICC progression and reveals that (+)-JQ1 is effective in this subset.

## Key findings

- IDH1 mutations correlate with better outcomes in ICC patients and models.
- MYC overexpression reverses the favorable effect of IDH1 mutations and promotes malignancy.
- ICC with IDH1 mutations and MYC amplification is sensitive to (+)-JQ1 but not to IDH1 inhibitors.

## Abstract

Intrahepatic cholangiocarcinoma (ICC) is one of most aggressive malignancies attributable to limited treatment options. IDH1 is commonly mutated and frequently cooccurred with other genetic alterations in ICC. The mechanism by which they affect ICC patient prognosis and therapeutic resistance remains incompletely understood. We aimed to investigate the function of MYC in IDH1mutant ICC progression and develop the novel therapeutic strategies. We well-established spontaneous ICC mouse models using transposon-based Idh1 and Kras mutations system in liver-specific knockout Trp53 mice. We generated multiple independent primary ICC cells and organoids derived from tumor tissues and established subcutaneous allograft ICC tumors. Together, multiple models in our studies were utilized to elucidate the role of MYC in IDH1-mutant ICC progression and to investigate therapeutic strategies. We demonstrated that the IDH1 mutations correlated with a favorable outcome in ICC patients and murine models. However, MYC overexpression drove the malignant phenotypic manifestation of Idh1 mutations, reversing this phenotype. Mechanistically, Idh1-mutant ICC reprogrammed glutamine metabolism to regulate Myc expression. Notably, ICC with concurrent IDH1 mutations and MYC amplification exhibited sensitivity to the MYC inhibitor (+)-JQ1, but remained resistant to the IDH1 mutation inhibitor AG120. This study identified MYC as a critical pathogenic driver of malignant progression in IDH1-mutant ICC. MYC overexpression conferred resistance to IDH1 mutation inhibitor, while creating a therapeutic vulnerability to MYC-targeted agents. The selective efficacy of (+)-JQ1 against IDH1-mutant ICC identified MYC inhibition as a promising precision medicine strategy for this molecular subset.

## Linked entities

- **Genes:** IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417], KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845], TP53 (tumor protein p53) [NCBI Gene 7157], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609]
- **Chemicals:** (+)-JQ1 (PubChem CID 46907787), AG120 (PubChem CID 71657455)
- **Diseases:** intrahepatic cholangiocarcinoma (MONDO:0003210)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, Brd4 (bromodomain containing 4) [NCBI Gene 57261] {aka Brd5, HUNK1, MCAP, WI-11513}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, GCLC (glutamate-cysteine ligase catalytic subunit) [NCBI Gene 2729] {aka CNSHA7, GCL, GCS, GLCL, GLCLC}, GLUD2 (glutamate dehydrogenase 2) [NCBI Gene 2747] {aka GDH2, GLUDP1}, GOT1 (glutamic-oxaloacetic transaminase 1) [NCBI Gene 2805] {aka AST, AST1, ASTQTL1, GIG18, SGOT, cAspAT}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Idh2 (isocitrate dehydrogenase 2 (NADP+), mitochondrial) [NCBI Gene 269951] {aka E430004F23, IDPm, Idh-2}, Bap1 (Brca1 associated protein 1) [NCBI Gene 104416] {aka 2300006C11Rik, mKIAA0272, uch-x4}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, Mdk (midkine) [NCBI Gene 17242] {aka MK, Mek}, GLS (glutaminase) [NCBI Gene 2744] {aka AAD20, CASGID, DEE71, EIEE71, GAC, GAM}, Idh1 (isocitrate dehydrogenase 1 (NADP+), soluble) [NCBI Gene 15926] {aka E030024J03Rik, Id-1, Idh-1, Idpc}, Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}, Ybx1 (Y box protein 1) [NCBI Gene 22608] {aka 1700102N10Rik, EF1A, MSY1, Nsep1, YB-1, dbpB}, SLC1A5 (solute carrier family 1 member 5) [NCBI Gene 6510] {aka AAAT, ASCT2, ATBO, M7V1, M7VS1, R16}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Cort (cortistatin) [NCBI Gene 12854] {aka CST, PCST}, Dnase1 (deoxyribonuclease I) [NCBI Gene 13419] {aka DNaseI, Dnl1}, GLS2 (glutaminase 2) [NCBI Gene 27165] {aka GA, GLS, LGA, hLGA}, Krt19 (keratin 19) [NCBI Gene 16669] {aka CK-19, EndoC, K19, Krt-1.19, Krt1-19}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, Iars1 (isoleucyl-tRNA synthetase 1) [NCBI Gene 105148] {aka 2510016L12Rik, E430001P04Rik, ILRS, Iars}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, Kras (Kras proto-oncogene, GTPase) [NCBI Gene 16653] {aka K-Ras, K-Ras 2, K-ras, Ki-ras, Kras-2, Kras2}, Mapk1 (mitogen-activated protein kinase 1) [NCBI Gene 26413] {aka 9030612K14Rik, ERK, Erk2, MAPK2, PRKM2, Prkm1}, Egf (epidermal growth factor) [NCBI Gene 13645], Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, Dner (delta/notch-like EGF repeat containing) [NCBI Gene 227325] {aka A930026D19Rik, BET, Bret}, Trf (transferrin) [NCBI Gene 22041] {aka Cd176, HP, Tf, Tfn, hpx}, Fgfr2 (fibroblast growth factor receptor 2) [NCBI Gene 14183] {aka Bek, Fgfr-2, Fgfr-7, Fgfr2b, Fgfr7, KGFR}, ASNS (asparagine synthetase (glutamine-hydrolyzing)) [NCBI Gene 440] {aka ASNSD, TS11}, Vcl (vinculin) [NCBI Gene 22330] {aka 9430097D22}, KRT19 (keratin 19) [NCBI Gene 3880] {aka CK19, K19, K1CS}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Trp53 (transformation related protein 53) [NCBI Gene 22059] {aka Tp53, bbl, bfy, bhy, p44, p53}
- **Diseases:** LUAD (MESH:D000077192), carcinogenesis (MESH:D063646), CCA (MESH:D018281), LGG (MESH:D008228), HCC (MESH:D006528), AML (MESH:D015470), solid (MESH:D018250), liver tumor (MESH:D008113), chondrosarcoma (MESH:D002813), fat mass (MESH:C536030), GBM (MESH:D005909), glioma (MESH:D005910), leukemia (MESH:D007938), bile duct cancer (MESH:D001650), tumorigenic (MESH:D002471), Tumors (MESH:D009369), cholestasis (MESH:D002779), cytotoxic (MESH:D064420)
- **Chemicals:** SYBR Green (MESH:C098022), glutamine (MESH:D005973), CO2 (MESH:D002245), citric acid (MESH:D019343), metformin (MESH:D008687), water (MESH:D014867), cytosine (MESH:D003596), CCK-8 (MESH:D012844), 5-methylcytosine (MESH:D044503), Agarose (MESH:D012685), TRIzol (MESH:C411644), lipid (MESH:D008055), chloroform (MESH:D002725), glutamate (MESH:D018698), N-acetyl-L-cysteine (MESH:D000111), isopropanol (MESH:D019840), SDS (MESH:D012967), PVDF (MESH:C024865), Tween (MESH:D011136), TBS-T (MESH:C027647), PBS (MESH:D007854), eosin (MESH:D004801), chloroquine (MESH:D002738), AG120 (MESH:C000627630), CB-839 (MESH:C000593334), DMSO (MESH:D004121), ethanol (MESH:D000431), Formalin (MESH:D005557), GlutaMAX (MESH:C054122), H&amp;E (MESH:D006371), bile acid (MESH:D001647), paraffin (MESH:D010232), ethanolamine (MESH:D019856), B27 (-), 2-HG (MESH:C019417), Hematoxylin (MESH:D006416), HEPES (MESH:D006531), penicillin (MESH:D010406), alpha-KG (MESH:D007656), 5-hydroxymethylcytosine (MESH:C011865), N2 (MESH:D009584), Lipofectamine 2000 (MESH:C086724), xylene (MESH:D014992), fatty acid (MESH:D005227), polyacrylamide (MESH:C016679), selenium (MESH:D012643), alanine (MESH:D000409), streptomycin (MESH:D013307), A83-01 (MESH:C507011), TCA (MESH:D014238)
- **Species:** Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** F12, initiation at 0, G12R, R132S, G12D
- **Cell lines:** pTKI-R132 — Homo sapiens (Human), Finite cell line (CVCL_6B31), pTKI-R132C — Mus musculus (Mouse), Hybridoma (CVCL_E964), HuCCT1 — Homo sapiens (Human), Intrahepatic cholangiocarcinoma, Cancer cell line (CVCL_0324), RBE — Homo sapiens (Human), Intrahepatic cholangiocarcinoma, Cancer cell line (CVCL_4896), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), pTM — Mus musculus (Mouse), Hybridoma (CVCL_LH68), HCCC9810 — Homo sapiens (Human), Intrahepatic cholangiocarcinoma, Cancer cell line (CVCL_6908), CVCL_0324 — Homo sapiens (Human), Glucose-6-phosphate dehydrogenase deficiency, Finite cell line (CVCL_4J09), CDX — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_UD76)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12965060/full.md

---
Source: https://tomesphere.com/paper/PMC12965060